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Top 13 sequence-alignment open source projects

Official git repository for Biopython (originally converted from CVS)

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python HTML c Parrot Roff Nu bioinformatics genomics dna protein-structure protein biopython phylogenetics sequence-alignment

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

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HTML javascript bioinformatics sequence-alignment

lexicon-mono-seq

DOM Text Based Multiple Sequence Alignment Library

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javascript TeX bioinformatics biology ascii vanilla-javascript data-visualization javascript-library async-programming ascii-art alignment help-wanted animation-library sequence-alignment msa good-first-issue msa-viewer

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

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c Roff Makefile bioinformatics genomics sequence-alignment

Collection of sequence alignment algorithms.

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javascript smith-waterman needleman-wunsch string-distance hacktoberfest sequence-alignment string-alignment

Neural Networks for Protein Sequence Alignment

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python Jupyter Notebook protein-structure language-modeling protein neural-networks protein-sequences sequence-alignment structural-alignments

BioAlignments.jl

Sequence alignment tools

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julia bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis biojulia smith-waterman-alignment sam-files

The Modular Aligner and The Modular SV Caller

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C++c python CMake NSIS shell bioinformatics seeds alignment read-aligners sequence-alignment fm-index structural-variation

SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs…

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VHDL Verilog shell C++Cuda SystemVerilog fpga gpu smith-waterman needleman-wunsch sequence-alignment long-reads minimap2 short-reads hardware-accelerator sequence-aligner edlib pre-alignment-filtering wavefront-alignment

Collection of commonly used RDP Tools for easy building

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Makefile bioinformatics microbiology microbiome bayesian-classifiers 16s sequence-alignment

seqalign pathing

Rust implementation of sequence alignment / Levenshtein distance by A* acceleration of the DP algorithm

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rust algorithm example levenshtein-distance dynamic-programming sequence-alignment

A fast multiple sequence alignment program.

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c CMake Roff C++bioinformatics sequence-alignment sequence-analysis

BISulfite-seq CUI Toolkit

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c shell python C++perl Makefile bioinformatics dna-methylation sequence-alignment

1-13 of 13 sequence-alignment projects