ngs-in-bioc
A 3-day course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
See the R script for which packages are required
An exampleData folder is required for the practicals. This can be downloaded from
bioinformatics-core-shared-training / ngs-in-bioc
Licence: other
A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
Stars: ✭ 37
Programming Languages
HTML
75241 projects
Projects that are alternatives of or similar to ngs-in-bioc
grape-nf
An automated RNA-seq pipeline using Nextflow
Stars: ✭ 30 (-18.92%)
Mutual labels: rna-seq, ngs
CD4-csaw
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
Stars: ✭ 16 (-56.76%)
Mutual labels: rna-seq, bioconductor
DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
Stars: ✭ 18 (-51.35%)
Mutual labels: rna-seq, bioconductor
ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
Stars: ✭ 24 (-35.14%)
Mutual labels: rna-seq, bioconductor
IsoQuant
Reference-based transcript discovery from long RNA read
Stars: ✭ 26 (-29.73%)
Mutual labels: rna-seq, ngs
Training Material
A collection of Galaxy-related training material
Stars: ✭ 184 (+397.3%)
Mutual labels: training, ngs
repo-template
Template for creating lesson plan repos, including the lesson plan template. Fork this or use it as a template to create new lesson plans.
Stars: ✭ 15 (-59.46%)
Mutual labels: training
KataContactsSwift
KataContacts written in Swift. The main goal is to practice Clean Architecture Development.
Stars: ✭ 60 (+62.16%)
Mutual labels: training
restful-booker
A free to use Web API for practising API testing on
Stars: ✭ 104 (+181.08%)
Mutual labels: training
shortest-tutorial-ever
A list of the shortest tutorials ever.
Stars: ✭ 14 (-62.16%)
Mutual labels: training
poreplex
A versatile sequenced read processor for nanopore direct RNA sequencing
Stars: ✭ 74 (+100%)
Mutual labels: rna-seq
HackerOne-Lessons
Transcribed video lessons of HackerOne to pdf's
Stars: ✭ 104 (+181.08%)
Mutual labels: training
ngs-test-data
A workflow for creating small NGS test data sets, useful for continuous integration.
Stars: ✭ 19 (-48.65%)
Mutual labels: ngs
BiocPkgTools
Computable build reports, package metadata, and download stats from the Bioconductor project
Stars: ✭ 20 (-45.95%)
Mutual labels: bioconductor
rvtests
Rare variant test software for next generation sequencing data
Stars: ✭ 114 (+208.11%)
Mutual labels: ngs
bioc 2020 tidytranscriptomics
Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
Stars: ✭ 25 (-32.43%)
Mutual labels: bioconductor
authlab
A lab to play with authentication and authorisation problems
Stars: ✭ 80 (+116.22%)
Mutual labels: training
Jovian
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Stars: ✭ 14 (-62.16%)
Mutual labels: ngs
Note that the project description data, including the texts, logos, images, and/or trademarks,
for each open source project belongs to its rightful owner.
If you wish to add or remove any projects, please contact us at [email protected].