GitPlanet

Cheap and reliable Node.js hosting starts at $3/month, and $1/month static HTML hosting

Created with love in Canada, visit hostnodejs.com today

Feel like to post an Ad? Learn Details
All Projects → lpantano → DEGreport

lpantano / DEGreport

Licence: MIT license
Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Programming Languages

r
7636 projects
python
139335 projects - #7 most used programming language
Dockerfile
14818 projects

Labels

rna-seqreportbioconductordifferential-expressionqcsmallrna

Projects that are alternatives of or similar to DEGreport

ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
Stars: ✭ 24 (+33.33%)
Mutual labels:  rna-seq, bioconductor, differential-expression
bioc 2020 tidytranscriptomics
Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
Stars: ✭ 25 (+38.89%)
Mutual labels:  bioconductor, differential-expression
ngs-in-bioc
A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
Stars: ✭ 37 (+105.56%)
Mutual labels:  rna-seq, bioconductor
diffexpr
Porting DESeq2 and DEXSeq into python via rpy2
Stars: ✭ 49 (+172.22%)
Mutual labels:  rna-seq, differential-expression
CD4-csaw
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
Stars: ✭ 16 (-11.11%)
Mutual labels:  rna-seq, bioconductor
rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Stars: ✭ 56 (+211.11%)
Mutual labels:  rna-seq, differential-expression
scaden
Deep Learning based cell composition analysis with Scaden.
Stars: ✭ 61 (+238.89%)
Mutual labels:  rna-seq
WPWatcher
Wordpress Watcher is a wrapper for WPScan that manages scans on multiple sites and reports by email and/or syslog. Schedule scans and get notified when vulnerabilities, outdated plugins and other risks are found.
Stars: ✭ 34 (+88.89%)
Mutual labels:  report
ensembldb
This is the ensembldb development repository.
Stars: ✭ 31 (+72.22%)
Mutual labels:  bioconductor
AsBuiltReport.Core
Repository for AsBuiltReport core module
Stars: ✭ 38 (+111.11%)
Mutual labels:  report
Subread to DEXSeq
Scripts to import your FeatureCounts output into DEXSeq
Stars: ✭ 23 (+27.78%)
Mutual labels:  rna-seq
anndata2ri
Convert between AnnData and SingleCellExperiment
Stars: ✭ 79 (+338.89%)
Mutual labels:  bioconductor
grape-nf
An automated RNA-seq pipeline using Nextflow
Stars: ✭ 30 (+66.67%)
Mutual labels:  rna-seq
kana
Single cell analysis in the browser
Stars: ✭ 81 (+350%)
Mutual labels:  rna-seq
trivy-vulnerability-explorer
Web application that allows to load a Trivy report in json format and displays the vulnerabilities of a single target in an interactive data table.
Stars: ✭ 63 (+250%)
Mutual labels:  report
pyreports
pyreports is a python library that allows you to create complex report from various sources
Stars: ✭ 78 (+333.33%)
Mutual labels:  report
TCC-GUI
📊 Graphical User Interface for TCC package
Stars: ✭ 35 (+94.44%)
Mutual labels:  rna-seq
rdocumentation-2.0
📚 RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.
Stars: ✭ 197 (+994.44%)
Mutual labels:  bioconductor
RBioFormats
📚 R interface to the Bio-Formats library
Stars: ✭ 20 (+11.11%)
Mutual labels:  bioconductor
pipeComp
A R framework for pipeline benchmarking, with application to single-cell RNAseq
Stars: ✭ 38 (+111.11%)
Mutual labels:  bioconductor
View All Similar Projects ➔

DEGreport

Build status Project Status: Active - The project has reached a stable, usable state and is being actively developed. BioC Downloads coverage Support this project by running your production jobs at BatchX

QCs, figures and analyses after differential expression with DESeq2 or other similar tool.

Pantano L (2017). DEGreport: Report of DEG analysis. R package version 1.13.8.

DOI: 10.18129/B9.bioc.DEGreport

Installation

This is an R package.

Bioconductor stable version

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("DEGreport")

Bioconductor latest version

devtools::install_git("https://[email protected]/packages/DEGreport")

devtools unstable version

install.packages("devtools")
devtools::install_github("lpantano/DEGreport")

Load the package and learn what to do:

browseVignettes("DEGreport")

Here is the last devel vignette.

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].