mmtf-sparkMethods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
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Mutual labels: protein-structure, protein-sequences
parapredParatope Prediction using Deep Learning
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Mutual labels: protein-structure, protein-sequences
tape-neurips2019Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)
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Mutual labels: protein-structure, protein-sequences
plmcInference of couplings in proteins and RNAs from sequence variation
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Mutual labels: protein-structure, protein-sequences
deepblastNeural Networks for Protein Sequence Alignment
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Mutual labels: protein-structure, protein-sequences
FunFolDesDataRosetta FunFolDes – a general framework for the computational design of functional proteins.
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Mutual labels: protein-structure
r3dmol🧬 An R package for visualizing molecular data in 3D
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Mutual labels: protein-structure
protein-transformerPredicting protein structure through sequence modeling
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Mutual labels: protein-structure
gcWGANGuided Conditional Wasserstein GAN for De Novo Protein Design
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Mutual labels: protein-structure
oncoEnrichRCancer-dedicated gene set interpretation
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Mutual labels: proteins
psipredPSIPRED Protein Secondary Structure Predictor
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Mutual labels: proteins
cbh21-protein-solubility-challengeTemplate with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinformatics Hackathon 2021.
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Mutual labels: protein-structure
hotspot3d3D hotspot mutation proximity analysis tool
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Mutual labels: protein-structure
BiopythonOfficial git repository for Biopython (originally converted from CVS)
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Mutual labels: protein-structure
SeqVecModelling the Language of Life - Deep Learning Protein Sequences
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Mutual labels: protein-structure
pmartRThe pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data. This includes data transformation, specification of groups that are to be …
Stars: ✭ 19 (-32.14%)
Mutual labels: proteins
lightdockProtein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
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Mutual labels: protein-structure
VSCoding-SequenceVSCode Extension for interactively visualising protein structure data in the editor
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Mutual labels: protein-structure
progenImplementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
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Mutual labels: proteins
hPDBPDB parser in Haskell
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Mutual labels: protein-structure
