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Top 9 protein-sequences open source projects

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

✭ 22

r bioinformatics cheminformatics fingerprint feature-extraction bioconductor drug-discovery protein-sequences molecular-descriptors

deepblast

Neural Networks for Protein Sequence Alignment

✭ 29

python Jupyter Notebook protein-structure language-modeling protein neural-networks protein-sequences sequence-alignment structural-alignments

FLIP

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

✭ 35

Jupyter Notebook python protein protein-sequences representation-learning protein-design protein-function-prediction protein-fitness-prediction

tape-neurips2019

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)

✭ 117

python TeX shell benchmark deep-learning protein-structure language-modeling dataset semi-supervised-learning protein-sequences

mmtf-spark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

✭ 20

java machine-learning big-data apache-spark protein-data-bank protein-structure scientific-computing protein-sequences protein-protein-interaction protein-ligand-interactions

sequencework

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

✭ 22

python Jupyter Notebook lists list bioinformatics genomics dna rna protein-sequences bioinformatics-analysis bioinformatics-scripts

plmc

Inference of couplings in proteins and RNAs from sequence variation

✭ 85

c matlab protein-structure protein-interaction protein-sequences undirected-graphs sequence-alignments

parapred

Paratope Prediction using Deep Learning

✭ 49

python machine-learning neural-network protein-structure lstm protein-sequences lstm-neural-networks

pytorch-rgn

Recurrent Geometric Network in Pytorch

✭ 28

Jupyter Notebook python machine-learning proteins protein-structure pytorch protein-sequences

1-9 of 9 protein-sequences projects