Top proteins open source projects

Cancer-dedicated gene set interpretation

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r TeX cancer proteins disease-gene-association tcga-data crispr-target protein-protein-interaction co-expression report-generator prioritization genesets high-throughput-screening cancer-survival functional-enrichment-analysis pathway-enrichment-analysis protein-complexes tissue-enrichment-analysis cancer-hallmark-evidence

dssp

Application to assign secondary structure to proteins

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C++CMake proteins pdb dssp

pmartR

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data. This includes data transformation, specification of groups that are to be …

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r HTML C++proteins mass-spectrometry peptides metabolites metabolomics-data data-summarization lipids

psipred

PSIPRED Protein Secondary Structure Predictor

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java c shell Makefile proteins secondary-structure-prediction

progen

Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax

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python shell deep-learning proteins artificial-intelligence

Porter5

Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

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C++python perl machine-learning deep-learning proteins secondary-structure psi-blast protein-structure-prediction hhblit

pytorch-rgn

Recurrent Geometric Network in Pytorch

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Jupyter Notebook python machine-learning proteins protein-structure pytorch protein-sequences

Top 7 proteins open source projects