SequanaSequana: a set of Snakemake NGS pipelines
Stars: ✭ 100 (+614.29%)
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Training MaterialA collection of Galaxy-related training material
Stars: ✭ 184 (+1214.29%)
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rvtestsRare variant test software for next generation sequencing data
Stars: ✭ 114 (+714.29%)
Mutual labels: ngs
UgeneUGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (+700%)
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FgbioTools for working with genomic and high throughput sequencing data.
Stars: ✭ 166 (+1085.71%)
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HtsjdkA Java API for high-throughput sequencing data (HTS) formats.
Stars: ✭ 220 (+1471.43%)
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TadbitTADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Stars: ✭ 78 (+457.14%)
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JovianMetagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Stars: ✭ 14 (+0%)
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AfterqcAutomatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Stars: ✭ 169 (+1107.14%)
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MGSEMapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Stars: ✭ 22 (+57.14%)
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NglessNGLess: NGS with less work
Stars: ✭ 115 (+721.43%)
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Rna Seq Star Deseq2RNA-seq workflow using STAR and DESeq2
Stars: ✭ 158 (+1028.57%)
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SnakepipesCustomizable workflows based on snakemake and python for the analysis of NGS data
Stars: ✭ 226 (+1514.29%)
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BioconvertBioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Stars: ✭ 112 (+700%)
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ngs-test-dataA workflow for creating small NGS test data sets, useful for continuous integration.
Stars: ✭ 19 (+35.71%)
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NgseasyDockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
Stars: ✭ 80 (+471.43%)
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DeepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stars: ✭ 2,404 (+17071.43%)
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ngs-in-biocA course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
Stars: ✭ 37 (+164.29%)
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galaksioAn easy-to-use way for running Galaxy workflows.
Stars: ✭ 19 (+35.71%)
Mutual labels: ngs
recentrifugeRecentrifuge: robust comparative analysis and contamination removal for metagenomics
Stars: ✭ 79 (+464.29%)
Mutual labels: ngs