GitPlanet

Cheap and reliable Node.js hosting starts at $3/month, and $1/month static HTML hosting

Created with love in Canada, visit hostnodejs.com today

Feel like to post an Ad? Learn Details
All Projects → theislab → Scanpy

theislab / Scanpy

Licence: bsd-3-clause
Single-Cell Analysis in Python. Scales to >1M cells.

Programming Languages

python
139335 projects - #7 most used programming language

Labels

machine-learningdata-sciencebioinformatics

Projects that are alternatives of or similar to Scanpy

Terpene Profile Parser For Cannabis Strains
Parser and database to index the terpene profile of different strains of Cannabis from online databases
Stars: ✭ 63 (-92.66%)
Mutual labels:  data-science, bioinformatics
Pretzel
Javascript full-stack framework for Big Data visualisation and analysis
Stars: ✭ 26 (-96.97%)
Mutual labels:  data-science, bioinformatics
Workshop
课题组每周研讨会
Stars: ✭ 28 (-96.74%)
Mutual labels:  data-science, bioinformatics
Anndata
Annotated data.
Stars: ✭ 171 (-80.07%)
Mutual labels:  data-science, bioinformatics
Dash.jl
Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.
Stars: ✭ 248 (-71.1%)
Mutual labels:  data-science, bioinformatics
Getting Started With Genomics Tools And Resources
Unix, R and python tools for genomics and data science
Stars: ✭ 587 (-31.59%)
Mutual labels:  data-science, bioinformatics
Oswitch
Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
Stars: ✭ 75 (-91.26%)
Mutual labels:  data-science, bioinformatics
Deep Rules
Ten Quick Tips for Deep Learning in Biology
Stars: ✭ 179 (-79.14%)
Mutual labels:  data-science, bioinformatics
Dash
Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.
Stars: ✭ 15,592 (+1717.25%)
Mutual labels:  data-science, bioinformatics
Dash Cytoscape
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Stars: ✭ 309 (-63.99%)
Mutual labels:  data-science, bioinformatics
Tiledb Vcf
Efficient variant-call data storage and retrieval library using the TileDB storage library.
Stars: ✭ 26 (-96.97%)
Mutual labels:  data-science, bioinformatics
Nonpareil
Estimate metagenomic coverage and sequence diversity
Stars: ✭ 26 (-96.97%)
Mutual labels:  bioinformatics
Pyensemblrest
A wrapper for the EnsEMBL REST API
Stars: ✭ 25 (-97.09%)
Mutual labels:  bioinformatics
Resources
PyMC3 educational resources
Stars: ✭ 930 (+8.39%)
Mutual labels:  data-science
Datacleaner
A Python tool that automatically cleans data sets and readies them for analysis.
Stars: ✭ 933 (+8.74%)
Mutual labels:  data-science
Vds
Verteego Data Suite
Stars: ✭ 9 (-98.95%)
Mutual labels:  data-science
Socrat
A Dynamic Web Toolbox for Interactive Data Processing, Analysis, and Visualization
Stars: ✭ 26 (-96.97%)
Mutual labels:  data-science
R Notes
Notes for using R language to do data mining and machine learning (Chinese)
Stars: ✭ 25 (-97.09%)
Mutual labels:  data-science
Docker Images
Out-of-box Data Science / AI platform | AI/数据科学的瑞士军刀
Stars: ✭ 25 (-97.09%)
Mutual labels:  data-science
Chrispher.github.com
Data Science
Stars: ✭ 8 (-99.07%)
Mutual labels:  data-science
View All Similar Projects ➔

|Stars| |PyPI| |PyPIDownloads| |BiocondaDownloads| |Docs| |Build Status|

.. |Stars| image:: https://img.shields.io/github/stars/theislab/scanpy?logo=GitHub&color=yellow :target: https://github.com/theislab/scanpy/stargazers .. |PyPI| image:: https://img.shields.io/pypi/v/scanpy?logo=PyPI :target: https://pypi.org/project/scanpy .. |PyPIDownloads| image:: https://pepy.tech/badge/scanpy :target: https://pepy.tech/project/scanpy .. doesn't really add anything .. |Bioconda| image:: https://img.shields.io/conda/vn/bioconda/scanpy?logo=Anaconda&color=green :target: https://bioconda.github.io/recipes/scanpy/README.html .. |BiocondaDownloads| image:: https://img.shields.io/conda/dn/bioconda/scanpy?logo=Anaconda&color=green :target: https://bioconda.github.io/recipes/scanpy/README.html .. |Docs| image:: https://readthedocs.com/projects/icb-scanpy/badge/?version=latest :target: https://scanpy.readthedocs.io .. |Build Status| image:: https://dev.azure.com/theislab/scanpy/_apis/build/status/theislab.scanpy?branchName=master :target: https://dev.azure.com/theislab/scanpy/_build .. wait until we have better coverage ;-) .. |Coverage| image:: https://codecov.io/gh/theislab/scanpy/branch/master/graph/badge.svg :target: https://codecov.io/gh/theislab/scanpy

Scanpy – Single-Cell Analysis in Python

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata <https://anndata.readthedocs.io>__. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

Discuss usage on Discourse_. Read the documentation_. If you'd like to contribute by opening an issue or creating a pull request, please take a look at our contributing guide. If Scanpy is useful for your research, consider citing Genome Biology (2018).

.. _Discourse: https://scanpy.discourse.group/ .. _documentation: https://scanpy.readthedocs.io .. _contributing guide: CONTRIBUTING.md .. _Genome Biology (2018): https://doi.org/10.1186/s13059-017-1382-0

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].