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All Projects → ababaian → serratus

ababaian / serratus

Licence: GPL-3.0 license
Ultra-deep search for novel viruses

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awsbioinformaticsopen-sciencecoronaviruscovid19sars-cov-2

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Serratus

Serratus is a collaborative Open Science project for ultra-rapid discovery of all viruses.

Paper: Petabase-scale sequence alignment catalyses viral discovery

Serratus Mountain in Squamish, BC. Canada

Background

Forewarned is Forearmed.

Our primary goal is to generate the viral data to accelerate the global research efforts in fighting emerging pathogens. We are re-analyzing all RNA-seq, meta-genomics, meta-transcriptomics and environmental sequencing data in the NCBI Short Read Archive to discover new viruses. That is >6 million biological samples or >10 petabases of sequencing data.

Contribute to Serratus

The Serratus team is actively looking to collaborate with all scientists and developers.

Serratus Usage

Learn more on the Serratus Wiki

Serratus Data Explorer

palmID: RdRP search

How To: Finding Novel Viruses

Accessing Raw Data

Cloud Architecture

Serratus CLI Usage

Data Release Policy

Our primary goal is to generate the viral data to accelerate the global research efforts in fighting emerging pathogens. To achieve this:

  • All software development is open-source and freely available (GPLv3)

  • All data, raw and processed, will be freely and immediatly available in the public domain in accordance with the INSDC Policy.

About The Team

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].