Top 75 open-science open source projects

A publicly-editable collection of open computational neuroscience resources

Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data

Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

The sources of the openSNP website

A list of openly available datasets in (mostly human) electrophysiology.

A framework for creating web-based knowledge maps

Scientific code needs to be open source and peer reviewed

R interface to the Open Science Framework (OSF)

FMA: A Dataset For Music Analysis

A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker

dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).

Kubernetes Helm Charts for the Center for Open Science

awesome open list of pointers about open science for software and computational science

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

R package to interface with OpenML

Module 5: Open Research Software and Open Source

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

A list of openly available software tools for (mostly human) electrophysiology.

automated reaction profile generation

Our discussion forum (see "issues") for the OpenCon Do-A-Thon, a day of trying, making, testing and doing to advance Open Research & Education. See our full website, with more information (including Github Help, and how to get involved).

Cookbook examples for the Insight Toolkit documented with Sphinx

Manuscript describing open collaborative writing with Manubot

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome

Research. Shared.

Open Machine Learning

Anonymous Github is a proxy server to support anonymous browsing of Github repositories for open-science code and data.

Source code for the CERN Open Data portal

Collective Knowledge framework (CK) helps to organize black-box research software as a database of reusable components and micro-services with common APIs, automation actions and extensible meta descriptions. See real-world use cases from Arm, General Motors, ACM, Raspberry Pi foundation and others:

Anahita is a platform and framework for developing open science and knowledge sharing applications on a social networking foundation.

Software development bot that automatically repairs build failures on continuous integration. Join the bot revolution! 🌟🤖🌟💞

Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D

This repository contains the code to generate predictions of critical violations at food establishments in Chicago. It also contains the results of an evaluation of the effectiveness of those predictions.

Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.

Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb

🔥 Hugo website builder, Hugo themes & Hugo CMS. No code, build with widgets! 创建在线课程，学术简历或初创网站。

Website for the Open Scholarship Strategy

an initiative to provide infrastructure for reproducible workflows around open data

A mentoring program for Open Life Science

fast functionalisation of molecules

🌍 Python package of VTK-based algorithms to analyze geoscientific data and models

Source code, data, and model results for "Fast non-linear gravity inversion in spherical coordinates with application to the South American Moho". Published in the Geophysical Journal International.

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.

A curated list of awesome open source projects from Utrecht University.

Transformation to Open Science

An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording

🌐 linkedresearch.org

Ultra-deep search for novel viruses

seminar series on data science, reproducible science and open source by @maxheld83

Open Science, Open Data, Open Source

Cookbook examples for the Insight Toolkit documented with Sphinx

Defects4J Dissection presents data to help researchers and practitioners to better understand the Defects4J bug dataset

DEPRECATED & Materials Moved: This sprint was to focus on brainstorming for the Joint Roadmap for Open Science Tools.

data wrangling simplicity, complete audit transparency, and at speed

Materials related to events I might attend, and to talks I am giving

A collection of portable workflows, automation recipes and components for MLOps in a unified CK format. Note that this repository is outdated - please check the 2nd generation of the CK workflow automation meta-framework with portable MLOps and DevOps components here:

Keeping track of activities around research data