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xu-lab / SINCERA

Licence: GPL-3.0 license
An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis

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SINCERA

An R S4 implementation of the SINCERA pipeline for single-cell RNA-seq profiling analysis

Developed by Minzhe Guo

Installation

  • In R or RStudio, type the following command to install devtools

    install.packages("devtools")
    library(devtools)
    
  • Then, use devtools to install SINCERA from github

    devtools::install_github("xu-lab/SINCERA")
    
  • Use library() to activate SINCERA

    library(SINCERA)
    

Demonstration

Citation

  • Guo M, Wang H, Potter S, Whitsett JA, Xu Y. 2015. SINCERA: A Computational Pipeline for Single Cell RNA-seq Profiling Analysis. PLoS Computational Biology. 11:11, e1004575.
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