EmptyDrops2017Code for the empty droplet and cell detection project from the HCA Hackathon.
Stars: ✭ 16 (-15.79%)
Mutual labels: single-cell-rna-seq, human-cell-atlas
diffxpyDifferential expression analysis for single-cell RNA-seq data.
Stars: ✭ 137 (+621.05%)
Mutual labels: differential-expression, single-cell-rna-seq
scarfToolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Stars: ✭ 54 (+184.21%)
Mutual labels: differential-expression, single-cell-rna-seq
pipeCompA R framework for pipeline benchmarking, with application to single-cell RNAseq
Stars: ✭ 38 (+100%)
Mutual labels: single-cell-rna-seq
DEGreportCreate a cromphensive report of DEG list coming from any analysis of RNAseq data
Stars: ✭ 18 (-5.26%)
Mutual labels: differential-expression
SOTSingle-cell Orientation Tracing
Stars: ✭ 20 (+5.26%)
Mutual labels: single-cell-rna-seq
scedarSingle-cell exploratory data analysis for RNA-Seq
Stars: ✭ 33 (+73.68%)
Mutual labels: single-cell-rna-seq
NebulosaR package to visualize gene expression data based on weighted kernel density estimation
Stars: ✭ 50 (+163.16%)
Mutual labels: single-cell-rna-seq
scadenDeep Learning based cell composition analysis with Scaden.
Stars: ✭ 61 (+221.05%)
Mutual labels: single-cell-rna-seq
scTCRseqProcessing of single cell RNAseq data for the recovery of TCRs in python
Stars: ✭ 22 (+15.79%)
Mutual labels: single-cell-rna-seq
scisorseqrscisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
Stars: ✭ 21 (+10.53%)
Mutual labels: single-cell-rna-seq
squidpySpatial Single Cell Analysis in Python
Stars: ✭ 235 (+1136.84%)
Mutual labels: single-cell-rna-seq
scRNAseq cell cluster labelingScripts to run and benchmark scRNA-seq cell cluster labeling methods
Stars: ✭ 41 (+115.79%)
Mutual labels: single-cell-rna-seq
heatmap-scatter-dashInteractive visualizations for differential expression
Stars: ✭ 25 (+31.58%)
Mutual labels: differential-expression
rna-seq-kallisto-sleuthA Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Stars: ✭ 56 (+194.74%)
Mutual labels: differential-expression
scLearnscLearn：Learning for single cell assignment
Stars: ✭ 26 (+36.84%)
Mutual labels: single-cell-rna-seq
OrchestratingSingleCellAnalysis-releaseAn online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
Stars: ✭ 35 (+84.21%)
Mutual labels: single-cell-rna-seq
metacellMetacell - Single-cell mRNA Analysis
Stars: ✭ 63 (+231.58%)
Mutual labels: single-cell-rna-seq
batchglmFit generalized linear models in python.
Stars: ✭ 22 (+15.79%)
Mutual labels: differential-expression
single cell portalTutorials, workflows, and convenience scripts for Single Cell Portal
Stars: ✭ 41 (+115.79%)
Mutual labels: human-cell-atlas
