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All Projects → BioJulia → SubstitutionModels.jl

BioJulia / SubstitutionModels.jl

Licence: other
Biological Sequence Substitution Models for Julia

Programming Languages

julia
2034 projects

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bioinformaticsphylogeneticssubstitution-models

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SubstitutionModels.jl

Release status:

DOI Latest Release License BioJulia maintainer: jangevaare

Development status:

test-lts test-stable test-nightly codecov.io

Description

SubstitutionModels.jl provides facilities to model the substitution process of biological sequences. Such models are essential for the analysis of sequence evolution, phylogenetics, and simulation.

We first aim to provide the most common substitution models used in the literature, but aim to build an extendable framework using julia's type system and traits, so as custom model types can be created and used.

Installation

The current release version can be installed from the Julia REPL:

using Pkg
Pkg.add("SubstitutionModels")

Contributing and Questions

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features. Please go to the contributing section of the documentation for more information.

If you have a question about contributing or using this package, you are encouraged to use the Bio category of the Julia discourse site.

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].