194 Open source projects that are alternatives of or similar to AMBER

Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

Improving genome bins through the combination of different binning programs

GraphBin: Refined binning of metagenomic contigs using assembly graphs

No description or website provided.

A collection of resources covering different aspects of Locust load testing tool usage.

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Measure performance trends of Ruby code

A developer-centric toolkit module for Android to facilitate in-depth profiling and benchmarking.

A suite of tools for benchmarking (load testing) web servers and databases

⏰ Tools for benchmark PHP algorithms.

A simple C++ 03/11/etc timer class for ~microsecond-precision cross-platform benchmarking. The implementation is as limited and as simple as possible to create the lowest amount of overhead.

The benchmark to compare performance of PHP ORM solutions.

LuaJIT Benchmark tests

A database and query tool for JMH benchmark results

A powerful Python framework for writing and running portable regression tests and benchmarks for HPC systems.

GARDENIA: Graph Analytics Repository for Designing Efficient Next-generation Accelerators

A robust, extensible metagenomics pipeline

Robustness benchmark for DNN models.

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

Show, plot and compare benchmark results

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

PERRRFFF CHERRRRK!

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

Raspberry Pi benchmarking scripts featuring a storage benchmark with score

Specification of the LDBC Social Network Benchmark suite

Benchmarks on NIH Chest X-ray 14 dataset

A Community Tool for Transiting Exoplanet Science with the JWST & HST

Large, curated set of benchmark datasets for evaluating automatic keyphrase extraction algorithms.

Interactive parametric benchmarks in Python

👵 fully programmable stress testing framework

Strain-level abundances estimation in metagenomic samples using variation graphs

Deep learning for Metagenome Assembly Error Detection

Find nearby 3D objects in constant time O(1).

Benchmarking for Elm

Distributed Benchmarking

A simple benchmark system for compiled and interpreted languages.

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

Remove contaminated contigs from genomes using k-mers and taxonomies.

Collection of open-source tools for debugging, benchmarking, load and stress testing your code or services.

Bonsai: Fast, flexible taxonomic analysis and classification

ganon classifies short DNA sequences against large sets of genomic sequences efficiently, with download and update of references (RefSeq/Genbank), taxonomic (NCBI/GTDB) and hierarchical classification, customized reporting and more

betsy (BPEL/BPMN Engine Test System) - A BPEL/BPMN Conformance Test Suite and Tool

Draw pretty micro benchmarking charts in HTML and allow to export them as png for benchee

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

A library for quantum characterization, verification, validation (QCVV), and benchmarking using pyQuil.

An open source application designed to load test Thrift applications

Predict AMPs in (meta)genomes and peptides

Python software used in the International Land Model Benchmarking (ILAMB) project

Extensive de-novo TE Annotator

From genomes to phenotypes: Traitar, the microbial trait analyzer

The MG-RAST Backend -- the API server

Fast in-silico normalization algorithm for NGS data

Meta-Omics Software for Community Analysis

Leiningen plugin for jmh-clojure

Tool for benchmarking apis. Uses ApacheBench(ab) to generate data and gnuplot for graphing. Adding new features almost daily

Simulating single-cell data using gene regulatory networks 📠

Multi-robot Exploration Testbed

🦕 A small lib to make your Deno benchmarking progress and results look pretty

⏱️ Reliable performance measurement for Go programs. All in one design.

Code for load testing the Stellar network.