GraphBinGraphBin: Refined binning of metagenomic contigs using assembly graphs
Stars: ✭ 35 (+34.62%)
Mutual labels: metagenomics
recentrifugeRecentrifuge: robust comparative analysis and contamination removal for metagenomics
Stars: ✭ 79 (+203.85%)
Mutual labels: metagenomics
charcoalRemove contaminated contigs from genomes using k-mers and taxonomies.
Stars: ✭ 32 (+23.08%)
Mutual labels: metagenomics
virnetVirNet: A deep attention model for viral reads identification
Stars: ✭ 26 (+0%)
Mutual labels: metagenomics
functree-ngAn interactive radial tree for functional hierarchies and omics data visualization
Stars: ✭ 18 (-30.77%)
Mutual labels: metagenomics
traitarFrom genomes to phenotypes: Traitar, the microbial trait analyzer
Stars: ✭ 41 (+57.69%)
Mutual labels: metagenomics
DAtestCompare different differential abundance and expression methods
Stars: ✭ 34 (+30.77%)
Mutual labels: metagenomics
StrainFLAIRStrain-level abundances estimation in metagenomic samples using variation graphs
Stars: ✭ 23 (-11.54%)
Mutual labels: metagenomics
Maaslin2MaAsLin2: Microbiome Multivariate Association with Linear Models
Stars: ✭ 76 (+192.31%)
Mutual labels: metagenomics
bonsaiBonsai: Fast, flexible taxonomic analysis and classification
Stars: ✭ 66 (+153.85%)
Mutual labels: metagenomics
SemiBinNo description or website provided.
Stars: ✭ 25 (-3.85%)
Mutual labels: metagenomics
metacalMetagenomics calibration R package
Stars: ✭ 16 (-38.46%)
Mutual labels: metagenomics
JovianMetagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Stars: ✭ 14 (-46.15%)
Mutual labels: metagenomics
microbiomeMarkerR package for microbiome biomarker discovery
Stars: ✭ 89 (+242.31%)
Mutual labels: metagenomics
MetaCoAGBinning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
Stars: ✭ 29 (+11.54%)
Mutual labels: metagenomics
matamMapping-Assisted Targeted-Assembly for Metagenomics
Stars: ✭ 18 (-30.77%)
Mutual labels: metagenomics
ORNAFast in-silico normalization algorithm for NGS data
Stars: ✭ 21 (-19.23%)
Mutual labels: metagenomics
gargammelgargammel is an ancient DNA simulator
Stars: ✭ 17 (-34.62%)
Mutual labels: metagenomics
metacherchantNo description or website provided.
Stars: ✭ 19 (-26.92%)
Mutual labels: metagenomics
DRAMDistilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Stars: ✭ 159 (+511.54%)
Mutual labels: metagenomics