398 Open source projects that are alternatives of or similar to Awesome Bioinformatics

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

Javascript full-stack framework for Big Data visualisation and analysis

A library for generating an interactive SVG visualization of CWL workflows

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

SquiggleKit: A toolkit for manipulating nanopore signal data

A wrapper for the EnsEMBL REST API

Support Vector Structural Variation Genotyper

Robust and efficient workflows using a simple language agnostic approach

(formerly eelpond) an automated RNA-Seq workflow system

Yet Another Chimeric Read Detector

highly-efficient & lightweight mutation signature matrix aggregation

Bioinformatics Workbook repository

DEPRECIATED! Please use nf-core/tools instead

Analysis pipelines for sequencing data

A Python package for fast operations on 1-dimensional genomic signal tracks

Flexible genotype query among 30,000+ samples whole-genome

Robust, flexible and resource-efficient pipelines using Go and the commandline

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Toolkit for processing sequences in FASTA/Q formats

GO enrichment with python -- pandas meets networkx

Scalable genomic data analysis.

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Unix, R and python tools for genomics and data science

Post-analysis of immune repertoire sequencing data

List of Computer Science courses with video lectures.

Create regional association plots from GWAS or meta-analysis

Scripts to download genomes from the NCBI FTP servers

compacted de Bruijn graph construction in low memory

BWK awk modified for biological data

GeneValidator: Identify problems with predicted genes

Tools to process and analyze deep sequencing data.

MyGene.info: A BioThings API for gene annotations

MMseqs2: ultra fast and sensitive search and clustering suite

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

d3 library to build circular graphs

🌈Scaffold genome sequence assemblies using linked read sequencing data

Bioinformatics containers

Comprehensive toolkit for generating various numerical features of protein sequences

Tools for working with SAM/BAM data

Conda recipes for the bioconda channel.

Python library to facilitate genome assembly, annotation, and comparative genomics

Snakemake-based workflow for detecting structural variants in WGS data

A fast and sensitive gapped read aligner

Genome inference from a population reference graph

Plant image analysis using OpenCV

课题组每周研讨会

Ultra-fast and memory-efficient (meta-)genome assembler

A fast whole-genome aligner based on de Bruijn graphs

A lightweight immune repertoire browser

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

An interactive web tool for quality control of DNA sequencing data

A tutorial on methods of 16S analysis with QIIME 1

UNCURL is a tool for single cell RNA-seq data analysis.