24 Open source projects that are alternatives of or similar to awesome-nanopore

A versatile sequenced read processor for nanopore direct RNA sequencing

Research release basecalling models and configurations

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Real-time species-typing visualisation for nanopore data.

Predict plasmids from uncorrected long read data

Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

Classify sequencing reads using MinHash.

InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..

Reference-based transcript discovery from long RNA read

Long read / genome alignment software

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

🔬 De novo assembly of nanopore reads using nextflow

VBZ compression plugin for nanopore signal data

Nanopore demultiplexing, QC and alignment pipeline

A tool to identify, orient, trim and rescue full length cDNA reads

Tools and software library developed by the ONT Applications group

Pipeline for annotating genomes using long read transcriptomics data with pinfish

A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

SARS-CoV-2 workflow for nanopore sequence data

An accurate and ultra-fast hybrid genome assembler

A fast tool for hybrid genome assembly of long and short reads

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

PEPPER-Margin-DeepVariant