pipeline-pinfish-analysisPipeline for annotating genomes using long read transcriptomics data with pinfish
Stars: ✭ 27 (-63.51%)
Mutual labels: rna-seq, nanopore, transcriptomics, cdna
IsoQuantReference-based transcript discovery from long RNA read
Stars: ✭ 26 (-64.86%)
Mutual labels: rna-seq, nanopore, transcriptomics
RATTLEReference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Stars: ✭ 35 (-52.7%)
Mutual labels: rna-seq, nanopore
dee2Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Stars: ✭ 32 (-56.76%)
Mutual labels: rna-seq, transcriptomics
TransPiTransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Stars: ✭ 18 (-75.68%)
Mutual labels: rna-seq, transcriptomics
poreplexA versatile sequenced read processor for nanopore direct RNA sequencing
Stars: ✭ 74 (+0%)
Mutual labels: rna-seq, nanopore
MetaOmGraphMetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
Stars: ✭ 30 (-59.46%)
Mutual labels: rna-seq, transcriptomics
alevin-fry🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Stars: ✭ 78 (+5.41%)
Mutual labels: rna-seq, transcriptomics
MINTIEMethod for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Stars: ✭ 24 (-67.57%)
Mutual labels: rna-seq, transcriptomics
scCATCHAutomatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Stars: ✭ 137 (+85.14%)
Mutual labels: rna-seq, transcriptomics
DGCADifferential Gene Correlation Analysis
Stars: ✭ 32 (-56.76%)
Mutual labels: rna-seq
wenganAn accurate and ultra-fast hybrid genome assembler
Stars: ✭ 81 (+9.46%)
Mutual labels: nanopore
kallistobustoolskallisto | bustools workflow for pre-processing single-cell RNA-seq data
Stars: ✭ 79 (+6.76%)
Mutual labels: rna-seq
GREINGREIN : GEO RNA-seq Experiments Interactive Navigator
Stars: ✭ 40 (-45.95%)
Mutual labels: rna-seq
rnatoyA proof of concept RNA-Seq pipeline with Nextflow
Stars: ✭ 32 (-56.76%)
Mutual labels: rna-seq
PECAPECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Stars: ✭ 31 (-58.11%)
Mutual labels: rna-seq
haslrA fast tool for hybrid genome assembly of long and short reads
Stars: ✭ 68 (-8.11%)
Mutual labels: nanopore
scrattch.visscRNA-seq data visualization from scrattch
Stars: ✭ 18 (-75.68%)
Mutual labels: transcriptomics
MERlinMERlin is an extensible analysis pipeline applied to decoding MERFISH data
Stars: ✭ 19 (-74.32%)
Mutual labels: transcriptomics
haystack bioHaystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Stars: ✭ 42 (-43.24%)
Mutual labels: rna-seq