All Projects → nanoporetech → pychopper

nanoporetech / pychopper

Licence: other
A tool to identify, orient, trim and rescue full length cDNA reads

Programming Languages

python
139335 projects - #7 most used programming language
Makefile
30231 projects
shell
77523 projects

Projects that are alternatives of or similar to pychopper

pipeline-pinfish-analysis
Pipeline for annotating genomes using long read transcriptomics data with pinfish
Stars: ✭ 27 (-63.51%)
Mutual labels:  rna-seq, nanopore, transcriptomics, cdna
IsoQuant
Reference-based transcript discovery from long RNA read
Stars: ✭ 26 (-64.86%)
Mutual labels:  rna-seq, nanopore, transcriptomics
RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Stars: ✭ 35 (-52.7%)
Mutual labels:  rna-seq, nanopore
dee2
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Stars: ✭ 32 (-56.76%)
Mutual labels:  rna-seq, transcriptomics
TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Stars: ✭ 18 (-75.68%)
Mutual labels:  rna-seq, transcriptomics
poreplex
A versatile sequenced read processor for nanopore direct RNA sequencing
Stars: ✭ 74 (+0%)
Mutual labels:  rna-seq, nanopore
MetaOmGraph
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
Stars: ✭ 30 (-59.46%)
Mutual labels:  rna-seq, transcriptomics
alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Stars: ✭ 78 (+5.41%)
Mutual labels:  rna-seq, transcriptomics
MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Stars: ✭ 24 (-67.57%)
Mutual labels:  rna-seq, transcriptomics
scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Stars: ✭ 137 (+85.14%)
Mutual labels:  rna-seq, transcriptomics
DGCA
Differential Gene Correlation Analysis
Stars: ✭ 32 (-56.76%)
Mutual labels:  rna-seq
wengan
An accurate and ultra-fast hybrid genome assembler
Stars: ✭ 81 (+9.46%)
Mutual labels:  nanopore
kallistobustools
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
Stars: ✭ 79 (+6.76%)
Mutual labels:  rna-seq
GREIN
GREIN : GEO RNA-seq Experiments Interactive Navigator
Stars: ✭ 40 (-45.95%)
Mutual labels:  rna-seq
rnatoy
A proof of concept RNA-Seq pipeline with Nextflow
Stars: ✭ 32 (-56.76%)
Mutual labels:  rna-seq
PECA
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Stars: ✭ 31 (-58.11%)
Mutual labels:  rna-seq
haslr
A fast tool for hybrid genome assembly of long and short reads
Stars: ✭ 68 (-8.11%)
Mutual labels:  nanopore
scrattch.vis
scRNA-seq data visualization from scrattch
Stars: ✭ 18 (-75.68%)
Mutual labels:  transcriptomics
MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
Stars: ✭ 19 (-74.32%)
Mutual labels:  transcriptomics
haystack bio
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Stars: ✭ 42 (-43.24%)
Mutual labels:  rna-seq

ONT_logo


This repository is now deprecated, please see https://github.com/epi2me-labs/pychopper

Help

Licence and Copyright

(c) 2019 Oxford Nanopore Technologies Ltd.

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.

Research Release

Research releases are provided as technology demonstrators to provide early access to features or stimulate Community development of tools. Support for this software will be minimal and is only provided directly by the developers. Feature requests, improvements, and discussions are welcome and can be implemented by forking and pull requests. However much as we would like to rectify every issue and piece of feedback users may have, the developers may have limited resource for support of this software. Research releases may be unstable and subject to rapid iteration by Oxford Nanopore Technologies.

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].