463 Open source projects that are alternatives of or similar to awflow

A DSL for data-driven computational pipelines

An open-source toolkit for deploying and managing high performance clusters for HPC, AI, and data analytics workloads.

Reproducible Data Science in Python (SciPy 2019 Tutorial)

Short course on reproducible science: what, why, how

Fully reproducible, open source scientific articles in LaTeX.

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

Papers with code for single cell related papers

🐳 Containerize R Markdown documents for continuous reproducibility

rrtools: Tools for Writing Reproducible Research in R

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

A curated list of reproducible research case studies, projects, tutorials, and media

Everware is about re-useable science, it allows people to jump right in to your research code.

A collection of various resources, examples, and executables for the general NREL HPC user community's benefit. Use the following website for accessing documentation.

Singularity: Application containers for Linux

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Future Gadget Laboratory

🚀 R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools

CK repository with components and automation actions to enable portable workflows across diverse platforms including Linux, Windows, MacOS and Android. It includes software detection plugins and meta packages (code, data sets, models, scripts, etc) with the possibility of multiple versions to co-exist in a user or system environment:

Software Papers as Software Modules: Towards a Culture of Reusable Results

Future Gadget Machine

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Source code for the CERN Analysis Preservation portal

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Parallel programming with Python

🔬 Empirical CLI

Coding Standards for the USC Biostats group

Examples and demos for ReproZip

WRENCH: Cyberinfrastructure Simulation Workbench

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Package an R workspace and all dependencies as a Docker container

(DEPRECATED) A set of launcher scripts to be used with OAR and Slurm for running jobs on the UL HPC platform

slurmR: A Lightweight Wrapper for Slurm

A Flexible Storage Framework for HPC

Port Forwarding Utility

Open Plant Pathology website

julia package for running code on slurm clusters

Distributed, workflow-driven integration environment

sparse communication library

Postier is a Laravel API automation platform to transfer data and to sync apps. You can build workflows with data and actions of multiple apps and apply logics to the data!

CLAW Compiler for Performance Portability

R package providing access and examples to TRNG C++ library

Public scenarios to crowdsource experiments (such as DNN crowd-benchmarking and crowd-tuning) using Collective Knowledge Framework across diverse mobile devices provided by volunteers. Results are continuously aggregated at the open repository of knowledge:

Temporal PHP SDK samples

A curated list of awesome things related to the Cadence and Temporal Workflow Engines

Cross-disease comparison of case-control gut microbiome studies

Platform for integrating genomic analysis with Jupyter Notebooks.

Integration between Micronaut and Camunda (Workflow Engine). We configure Camunda with sensible defaults, so that you can get started with minimum configuration: simply add a dependency in your Micronaut project to embed the workflow engine!

Submit R code to a Slurm cluster

Code for "Depth Uncertainty in Neural Networks" (https://arxiv.org/abs/2006.08437)

A C++ Library for Influence Maximization

Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure

ROCm Machine Learning and HPC Stack installer

Provisioning tool for clusters

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

funsies is a lightweight workflow engine 🔧

Big Compute Learning Labs

The PennyLane-Lightning plugin provides a fast state-vector simulator written in C++ for use with PennyLane

CHAI and RAJA provide an excellent base on which to build portable codes. CARE expands that functionality, adding new features such as loop fusion capability and a portable interface for many numerical algorithms. It provides all the basics for anyone wanting to write portable code.

Data Analysis Workflows & Reproducibility Learning Resources