384 Open source projects that are alternatives of or similar to biowasm

C development system for (Nitr)OS9/6x09, with source

Genome-wide imputation pipeline

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viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Big Compute Learning Labs

Population assignment analysis using R

It's my honor to drive you fucking fire faster, to have more time with your Family and Sunshine.This tool is for those who often want to search for a string Deeply into a directory in Recursive mode, but not with the great tools: grep, ack, ripgrep .........every thing should be Small, Thin, Fast, Lazy....without Think and Remember too much ...一…

Pure-JavaScript implementation of the jq JSON query language

Bead-based single-cell atac processing

Web `grep` for Git repositories

A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.

Find target sites for the miRNAs in genomic sequences

Bioconductor package for management of multi-assay data

A tool for fast and accurate summarizing of variant calling format (VCF) files

Grep for something, then write the original files directly through the search results.

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Multi-sample somatic variant caller

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

GA4GH Variation Representation Python Implementation

A web tool for interactively using and chaining command-line text manipulation utilities like sed, grep, and awk.

[unmantained] A playground for jq inside atom

xHLA: Fast and accurate HLA typing from short read sequence data

Genome Interval Arithmetic in R

Interactive exercises for learning jq

Ultrafast sequence typing and gene detection from NGS raw reads

Haplotype VCF comparison tools

Quickly check your project for typos

Official git repository for Biopython (originally converted from CVS)

Transcripts annotation and GO enrichment Fisher tests

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

use the noise

A Java API for high-throughput sequencing data (HTS) formats.

Outline grep — search in indentation-structured texts (Rust version)

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

A jq playground, written in WebAssembly

SDK for GPU accelerated genome assembly and analysis

SciFi theme for Conky

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

DriverPower

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Analysing Capture Seq Count Data

A powerful open source data warehouse system

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

GenomeTools genome analysis system.

Nextflow basic tutorial for newbie users

Chromosome visualization for the web

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

Ten Quick Tips for Deep Learning in Biology

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Rapid large-scale prokaryote pan genome analysis

a pileup library that embraces the huge

An open-source toolkit for large-scale genomic analysis

Forward-time simulation in Python using fwdpp

Collection of scripts for bacterial genomics

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Python-based UCSC genome browser snapshot-taker and gallery-maker

Explore rearrangements and copy-number amplifications in a cancer genome

Grep Web pages with extra features like JS deobfuscation and OCR

Genome Annotation Without Nightmares