mgatkmgatk: mitochondrial genome analysis toolkit
Stars: ✭ 65 (+225%)
Mutual labels: genomics, epigenetics, single-cell
haystack bioHaystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Stars: ✭ 42 (+110%)
Mutual labels: epigenetics, epigenomics
CUT-RUNTools-2.0CUT&RUN and CUT&Tag data processing and analysis
Stars: ✭ 36 (+80%)
Mutual labels: genomics, single-cell
gchromVARCell type specific enrichments using finemapped variants and quantitative epigenetic data
Stars: ✭ 31 (+55%)
Mutual labels: epigenetics, single-cell
GCModellerGCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
Stars: ✭ 25 (+25%)
Mutual labels: genomics, single-cell
PandoMultiome GRN inference.
Stars: ✭ 21 (+5%)
Mutual labels: single-cell, epigenomics
netSmoothnetSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
Stars: ✭ 23 (+15%)
Mutual labels: genomics, single-cell
switchdeInference of switch-like differential expression along single-cell trajectories
Stars: ✭ 19 (-5%)
Mutual labels: genomics, single-cell
OpenOmicsA bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.
Stars: ✭ 22 (+10%)
Mutual labels: genomics
bactmapA mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Stars: ✭ 36 (+80%)
Mutual labels: genomics
CuteVCFsimple viewer for variant call format using htslib
Stars: ✭ 30 (+50%)
Mutual labels: genomics
nthashntHash implementation in Rust
Stars: ✭ 26 (+30%)
Mutual labels: genomics
cryfaA secure encryption tool for genomic data
Stars: ✭ 53 (+165%)
Mutual labels: genomics
human genomics pipelineA Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Stars: ✭ 19 (-5%)
Mutual labels: genomics
STingUltrafast sequence typing and gene detection from NGS raw reads
Stars: ✭ 15 (-25%)
Mutual labels: genomics
vrs-pythonGA4GH Variation Representation Python Implementation
Stars: ✭ 35 (+75%)
Mutual labels: genomics
SCOPE-toolsSingle-Cell Omics Preparation Entity Tools
Stars: ✭ 14 (-30%)
Mutual labels: single-cell
omxware-getting-startedExamples to get started with IBM Functional Genomics Platform
Stars: ✭ 13 (-35%)
Mutual labels: genomics
mapping-iterative-assemblerConsensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
Stars: ✭ 15 (-25%)
Mutual labels: genomics
cellsnp-liteEfficient genotyping bi-allelic SNPs on single cells
Stars: ✭ 47 (+135%)
Mutual labels: single-cell