BrainyBrainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.
Stars: ✭ 29 (+0%)
Keras UnetHelper package with multiple U-Net implementations in Keras as well as useful utility tools helpful when working with image semantic segmentation tasks. This library and underlying tools come from multiple projects I performed working on semantic segmentation tasks
Stars: ✭ 196 (+575.86%)
Segmentation modelsSegmentation models with pretrained backbones. Keras and TensorFlow Keras.
Stars: ✭ 3,575 (+12227.59%)
DARTSCode for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation
Stars: ✭ 61 (+110.34%)
Multiclass Semantic Segmentation CamvidTensorflow 2 implementation of complete pipeline for multiclass image semantic segmentation using UNet, SegNet and FCN32 architectures on Cambridge-driving Labeled Video Database (CamVid) dataset.
Stars: ✭ 67 (+131.03%)
MedicalzoopytorchA pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
Stars: ✭ 546 (+1782.76%)
Data Science Bowl 2018End-to-end one-class instance segmentation based on U-Net architecture for Data Science Bowl 2018 in Kaggle
Stars: ✭ 56 (+93.1%)
subpixel-embedding-segmentationPyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)
Stars: ✭ 22 (-24.14%)
VNetProstate MR Image Segmentation 2012
Stars: ✭ 54 (+86.21%)
DipyDIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Stars: ✭ 417 (+1337.93%)
Robot Surgery SegmentationWining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge
Stars: ✭ 528 (+1720.69%)
GansegFramework for medical image segmentation using deep neural networks
Stars: ✭ 18 (-37.93%)
All About The GanAll About the GANs(Generative Adversarial Networks) - Summarized lists for GAN
Stars: ✭ 630 (+2072.41%)
MedicaldetectiontoolkitThe Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
Stars: ✭ 917 (+3062.07%)
clinicadlFramework for the reproducible processing of neuroimaging data with deep learning methods
Stars: ✭ 114 (+293.1%)
U NetU-Net: Convolutional Networks for Biomedical Image Segmentation
Stars: ✭ 374 (+1189.66%)
Niftynet[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
Stars: ✭ 1,276 (+4300%)
pixel-decoderA tool for running deep learning algorithms for semantic segmentation with satellite imagery
Stars: ✭ 68 (+134.48%)
Cascaded FcnSource code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"
Stars: ✭ 296 (+920.69%)
SlicergitsvnarchiveMulti-platform, free open source software for visualization and image computing.
Stars: ✭ 896 (+2989.66%)
TorchioMedical image preprocessing and augmentation toolkit for deep learning
Stars: ✭ 708 (+2341.38%)
Segment OpenSegment Source Distribution
Stars: ✭ 34 (+17.24%)
SlicerMulti-platform, free open source software for visualization and image computing.
Stars: ✭ 263 (+806.9%)
Vnet TensorflowTensorflow implementation of the V-Net architecture for medical imaging segmentation.
Stars: ✭ 84 (+189.66%)
Quicknat pytorchPyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
Stars: ✭ 74 (+155.17%)
LivianetThis repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
Stars: ✭ 143 (+393.1%)
Kiu Net PytorchOfficial Pytorch Code of KiU-Net for Image Segmentation - MICCAI 2020 (Oral)
Stars: ✭ 134 (+362.07%)
medSegMedical Image Segmentation Toolkit based on PaddlePaddle - 基于paddle的医学影像分割框架
Stars: ✭ 88 (+203.45%)
neurdicomRESTful PACS server with plugins
Stars: ✭ 97 (+234.48%)
Medical TransformerPytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation"
Stars: ✭ 153 (+427.59%)
dicomifierA medical image converter
Stars: ✭ 22 (-24.14%)
bidscoinBIDScoin converts your source-level neuroimaging data to BIDS
Stars: ✭ 75 (+158.62%)
ANTsRAdvanced Normalization Tools in R
Stars: ✭ 101 (+248.28%)
MIRACLMulti-modal Image Registration And Connectivity anaLysis
Stars: ✭ 23 (-20.69%)
mrnetBuilding an ACL tear detector to spot knee injuries from MRIs with PyTorch (MRNet)
Stars: ✭ 98 (+237.93%)
covid19.MIScnnRobust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data
Stars: ✭ 77 (+165.52%)
PyimsegmImage segmentation - general superpixel segmentation & center detection & region growing
Stars: ✭ 213 (+634.48%)
SemiDenseNetRepository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.
Stars: ✭ 55 (+89.66%)
GaNDLFA generalizable application framework for segmentation, regression, and classification using PyTorch
Stars: ✭ 77 (+165.52%)
MRQyMRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
Stars: ✭ 58 (+100%)
Brain-Tumor-SegmentationAttention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation
Stars: ✭ 125 (+331.03%)