Top 40 mri open source projects

real-time application for video-based methods in the context of MRI

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

MRI simulation toolkit

Sigmanet: Systematic Evaluation of Iterative Deep Neural Networks for Fast Parallel MR Image Reconstruction,

Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.

Resurces for MRI images processing and deep learning in 3D

Multimodal Brain Tumor Segmentation Challenge 2018

Stanford University Rad229 Class Code: MRI Signals and Sequences

medical image visualization library and development toolkit

MATLAB / Octave tools for BIDS datasets

Multi-modal Image Registration And Connectivity anaLysis

TSAN: Two-Stage-Age-Net, for brain age estimation from T1-weighted MRI data.

Advanced Normalization Tools in R

Python implementations of GRAPPA-like algorithms.

Open resource exchange platform for non-human primate neuroimaging

BIDScoin converts your source-level neuroimaging data to BIDS

Smart India Hackathon 2019 project given by the Department of Atomic Energy

A medical image converter

jemal gem – Ruby interface to jemalloc

A robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.

Awesome Magnetic Resonance Imaging (MRI)

Utility functions for working with DICOM and BIDS neuroimaging data

List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

Specialized tools for MRI

An AI-powered open-source medical image analysis toolbox

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Graph theory analysis of brain MRI data

Neural networks to segment some type of biomedical images

MIRT: Michigan Image Reconstruction Toolbox (Julia version)

PyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)

NumPy, SciPy, MRI and Music | Presented at ISMRM 2021 Sunrise Educational Session

A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system

Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.

[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation