JcviPython library to facilitate genome assembly, annotation, and comparative genomics
Stars: ✭ 404 (+485.51%)
Remote Dev Jobs StreamerMatch Tweets containing remote developer jobs using Filtered Stream and Tweet Annotations
Stars: ✭ 24 (-65.22%)
MiradorAn open-source, web-based 'multi-up' viewer that supports zoom-pan-rotate functionality, ability to display/compare simple images, and images with annotations.
Stars: ✭ 386 (+459.42%)
UtaUniversal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Stars: ✭ 38 (-44.93%)
Hyperf🚀 A coroutine framework that focuses on hyperspeed and flexibility. Building microservice or middleware with ease.
Stars: ✭ 4,206 (+5995.65%)
NanopolishSignal-level algorithms for MinION data
Stars: ✭ 367 (+431.88%)
Cwl SvgA library for generating an interactive SVG visualization of CWL workflows
Stars: ✭ 57 (-17.39%)
DeeppurposeA Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
Stars: ✭ 342 (+395.65%)
Waveform PlaylistMultitrack Web Audio editor and player with canvas waveform preview. Set cues, fades and shift multiple tracks in time. Record audio tracks or provide audio annotations. Export your mix to AudioBuffer or WAV! Project inspired by Audacity.
Stars: ✭ 919 (+1231.88%)
CutadaptCutadapt removes adapter sequences from sequencing reads
Stars: ✭ 340 (+392.75%)
EtrfExact Tandem Repeat Finder (not a TRF replacement)
Stars: ✭ 35 (-49.28%)
Rectlabel SupportRectLabel - An image annotation tool to label images for bounding box object detection and segmentation.
Stars: ✭ 338 (+389.86%)
Elvers(formerly eelpond) an automated RNA-Seq workflow system
Stars: ✭ 22 (-68.12%)
BiopandasWorking with molecular structures in pandas DataFrames
Stars: ✭ 329 (+376.81%)
Mqcms🤖 ⚡️ 麻雀虽小 五脏俱全 基于hyperf的快速优雅的应用开发框架
Stars: ✭ 64 (-7.25%)
AutodslAuto-generate Kotlin DSL
Stars: ✭ 316 (+357.97%)
Helmsmanhighly-efficient & lightweight mutation signature matrix aggregation
Stars: ✭ 19 (-72.46%)
Dash CytoscapeInteractive network visualization in Python and Dash, powered by Cytoscape.js
Stars: ✭ 309 (+347.83%)
BwaBurrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Stars: ✭ 970 (+1305.8%)
PyfaidxEfficient pythonic random access to fasta subsequences
Stars: ✭ 307 (+344.93%)
CookiecutterDEPRECIATED! Please use nf-core/tools instead
Stars: ✭ 18 (-73.91%)
SinglefileWeb Extension for Firefox/Chrome/MS Edge and CLI tool to save a faithful copy of an entire web page in a single HTML file
Stars: ✭ 4,417 (+6301.45%)
GsonpathA Java annotation processor library which generates gson type adapters using basic JsonPath style annotations
Stars: ✭ 54 (-21.74%)
BionodeModular and universal bioinformatics
Stars: ✭ 294 (+326.09%)
PybedgraphA Python package for fast operations on 1-dimensional genomic signal tracks
Stars: ✭ 17 (-75.36%)
MemexBrowser Extension to full-text search your browsing history & bookmarks.
Stars: ✭ 3,344 (+4746.38%)
FastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Stars: ✭ 966 (+1300%)
Dada2Accurate sample inference from amplicon data with single nucleotide resolution
Stars: ✭ 276 (+300%)
ManormA robust model for quantitative comparison of ChIP-Seq data sets.
Stars: ✭ 16 (-76.81%)
AnvioAn analysis and visualization platform for 'omics data
Stars: ✭ 273 (+295.65%)
CobrapyCOBRApy is a package for constraint-based modeling of metabolic networks.
Stars: ✭ 267 (+286.96%)
GalaxyData intensive science for everyone.
Stars: ✭ 812 (+1076.81%)
SeqA high-performance, Pythonic language for bioinformatics
Stars: ✭ 263 (+281.16%)
Cytometry Clustering ComparisonR scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Stars: ✭ 30 (-56.52%)
PygenoPersonalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Stars: ✭ 261 (+278.26%)
LabelmeImage Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).
Stars: ✭ 7,742 (+11120.29%)
UxmpdfkitAn iOS PDF viewer and annotator written in Swift that can be embedded into any application.
Stars: ✭ 260 (+276.81%)
Sv2Support Vector Structural Variation Genotyper
Stars: ✭ 52 (-24.64%)
Dnafeaturesviewer👁 Python library to plot DNA sequence features (e.g. from Genbank files)
Stars: ✭ 259 (+275.36%)
HailScalable genomic data analysis.
Stars: ✭ 706 (+923.19%)
Eggnog MapperFast genome-wide functional annotation through orthology assignment
Stars: ✭ 256 (+271.01%)
Tator NativeTator: The video and image annotator
Stars: ✭ 28 (-59.42%)
deepsignal-plantDetecting methylation using signal-level features from Nanopore sequencing reads of plants
Stars: ✭ 21 (-69.57%)
React Plotly.jsA plotly.js React component from Plotly 📈
Stars: ✭ 701 (+915.94%)
searchguiHighly adaptable common interface for proteomics search and de novo engines
Stars: ✭ 22 (-68.12%)
TaggerineAnnotation tool for images
Stars: ✭ 61 (-11.59%)
platonIdentification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Stars: ✭ 52 (-24.64%)
CromwellScientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Stars: ✭ 655 (+849.28%)
qmflowsThis library tackles the construction and efficient execution of computational chemistry workflows
Stars: ✭ 35 (-49.28%)
RasusaRandomly subsample sequencing reads to a specified coverage
Stars: ✭ 28 (-59.42%)
React DecorationA collection of decorators for React Components
Stars: ✭ 641 (+828.99%)
Arcs🌈Scaffold genome sequence assemblies using linked read sequencing data
Stars: ✭ 67 (-2.9%)
Graphql TypescriptDefine and build GraphQL Schemas using typed classes
Stars: ✭ 67 (-2.9%)
ClusterEasy Map Annotation Clustering 📍
Stars: ✭ 1,132 (+1540.58%)
Pairix1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
Stars: ✭ 57 (-17.39%)
MigmapHTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Stars: ✭ 38 (-44.93%)
EmaFast & accurate alignment of barcoded short-reads
Stars: ✭ 24 (-65.22%)
Projects🪐 End-to-end NLP workflows from prototype to production
Stars: ✭ 397 (+475.36%)