606 Open source projects that are alternatives of or similar to Charger

Comprehensive toolkit for generating various numerical features of protein sequences

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

GeneValidator: Identify problems with predicted genes

A full spaCy pipeline and models for scientific/biomedical documents.

Simple, efficient Excel to POJO library for Java

Snakemake-based workflow for detecting structural variants in WGS data

LAMBDA – the Local Aligner for Massive Biological DatA

Small Broadcast Receiver Library for Android

Intellij idea i18next support plugin

Create regional association plots from GWAS or meta-analysis

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

Python Programming for Biologists

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Parser and database to index the terpene profile of different strains of Cannabis from online databases

Remove annotations from the e-books downloaded from the pirate sites, such as www.it-ebooks.info, www.allitebooks.com and another ones.

Emperor a tool for the analysis and visualization of large microbial ecology datasets

Export all folders and documents from Quip

Genome inference from a population reference graph

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Lightweight Iterative Gene set Enrichment in R

UNCURL is a tool for single cell RNA-seq data analysis.

Model and predict short DNA sequence features with neural networks

🐣 locally query the ncbi taxonomy

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

A library for generating an interactive SVG visualization of CWL workflows

Exact Tandem Repeat Finder (not a TRF replacement)

🤖 ⚡️ 麻雀虽小 五脏俱全 基于hyperf的快速优雅的应用开发框架

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

A Java annotation processor library which generates gson type adapters using basic JsonPath style annotations

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A minimal viable replacement for the Lombok @Builder plugin for Kotlin code

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

Support Vector Structural Variation Genotyper

Tator: The video and image annotator

Annotation tool for images

Randomly subsample sequencing reads to a specified coverage

Yet Another Chimeric Read Detector

课题组每周研讨会

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

A lightweight immune repertoire browser

Analysis pipelines for sequencing data

A collection of publications on comparison of high-throughput sequencing technologies.

A tutorial on methods of 16S analysis with QIIME 1

Atom package that shows annotations (e.g. for overriden methods interface implementations) in your PHP source code.

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Single-Cell Analysis in Python. Scales to >1M cells.

tool for creating and sharing annotations, using github for storage and social network

Estimate metagenomic coverage and sequence diversity

Tools and databases for analyzing HLA and VDJ genes.

Javascript full-stack framework for Big Data visualisation and analysis

An expressive DSL built on top of JavaPoet to make writing code almost as easy as writing the code yourself.

Official code repository for GATK versions 4 and up

🌈Scaffold genome sequence assemblies using linked read sequencing data

Define and build GraphQL Schemas using typed classes

Easy Map Annotation Clustering 📍

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool