186 Open source projects that are alternatives of or similar to civicmine

Vancouver Event and Relation System for Extraction

A Dragnet that also extract author, headline, date, keywords from context

자연어 처리와 텍스트 분석을 위한 오픈소스 파이썬 라이브러리 입니다.

An integrated framework in R for textual sentiment time series aggregation and prediction

TCGA data acquisition and processing for Project Cognoma

Cancer Predisposition Sequencing Reporter (CPSR)

Fast and accurate gene fusion detection from RNA-Seq data

The Text Mining Elixir

Gene fusion detection and visualization

Detect and visualize text reuse

⛔ ARCHIVED ⛔ Fetch 'Scholary' Full Text from 'Crossref'

NLP framework in python for entity recognition and relationship extraction

Document Enrichment plugin for Elasticsearch

CNN histopathologic tumor identifier.

Conversational text Analysis using various NLP techniques

Information Inference Service of the OpenAIRE system

A simple collection of well working NLP models (Keras, H2O, StarSpace) tuned and benchmarked on a variety of datasets.

A Slicer extension to provide a GUI around pyradiomics

Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents

Initial data release for drug-target interactions of the cancer targetome.

Segmentation based event detection from Tweets. Published at NAACL SRW 2019

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

List of IARC bioinformatics nextflow pipelines

Twitter Sentiment Analyzer

The aim of this repository is to show a baseline model for text classification by implementing a LSTM-based model coded in PyTorch. In order to provide a better understanding of the model, it will be used a Tweets dataset provided by Kaggle.

A keyphrase extractor for Persian

Curated List of Biomarkers, Blood Tests, and Blood Tracking

Flexible and powerful platform for biomedical information extraction from text

Blue Brain text mining toolbox for semantic search and structured information extraction

Using Word2Vec to explore semantic similarities between the entities of "A Song of Ice and Fire" ("Game of Thrones").

Text corpus for Bahasa Malaysia, https://malaya.readthedocs.io/en/latest/Dataset.html

Term frequency–inverse document frequency for Chinese novel/documents implemented in python.

Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches

Website for "A survey of learning to hash for Computer Vision" https://learning2hash.github.io

Backend Server for CIViC Project

Corpus of Online Medical EnTities: the cometA corpus

Functional and structural analysis of tables in research papers (Table disentangling)

📊 Tools to Perform ‘Misinformation’ Analysis on a Text Corpus (wrapper for methods in https://github.com/PDXBek/Misinformation)

parsing fixed width files content made easy

Tools to uniformly read in text data including semi-structured transcripts

Cancer-dedicated gene set interpretation

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Korpuslinguistik war noch nie so einfach...

[KDD 2020] Hierarchical Topic Mining via Joint Spherical Tree and Text Embedding

Python & command-line tool to gather text on the Web: web crawling/scraping, extraction of text, metadata, comments

Distant Reader, a tool for using & understanding a corpus

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

Odinson is a powerful and highly optimized open-source framework for rule-based information extraction. Odinson couples a simple, yet powerful pattern language that can operate over multiple representations of text, with a runtime system that operates in near real time.

Biomedical NLP Corpus or Datasets.

R.TeMiS: R Text Mining Solution

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

Codes for text-mined solid-state reactions dataset

A basic framework for pulmonary nodule detection and characterization in CT

Repository for the projects needed to complete the Data Analyst Nanodegree.

A Python-Tensorflow neural network for classifying cancer data

Mixing Dirichlet Topic Models and Word Embeddings to Make lda2vec from this paper https://arxiv.org/abs/1605.02019

An easy-to-use library to extract indices from texts.

Framework for information extraction from tables

Deduce: de-identification method for Dutch medical text