deTiNDeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
Stars: ✭ 46 (-11.54%)
Mutual labels: cancer-genomics, cancer-variants
needlestackMulti-sample somatic variant caller
Stars: ✭ 45 (-13.46%)
Mutual labels: ngs
bac-genomics-scriptsCollection of scripts for bacterial genomics
Stars: ✭ 39 (-25%)
Mutual labels: ngs
binMy bioinfo toolbox
Stars: ✭ 42 (-19.23%)
Mutual labels: ngs
grape-nfAn automated RNA-seq pipeline using Nextflow
Stars: ✭ 30 (-42.31%)
Mutual labels: ngs
orchidA novel management, annotation, and machine learning framework for analyzing cancer mutations
Stars: ✭ 29 (-44.23%)
Mutual labels: cancer-genomics
ngs-in-biocA course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
Stars: ✭ 37 (-28.85%)
Mutual labels: ngs
myVCFmyVCF: a web-based platform for target and exome mutations data management
Stars: ✭ 18 (-65.38%)
Mutual labels: ngs
ngs-preprocessA pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Stars: ✭ 22 (-57.69%)
Mutual labels: ngs
civic-serverBackend Server for CIViC Project
Stars: ✭ 39 (-25%)
Mutual labels: cancer-genomics
Circle-MapA method for circular DNA detection based on probabilistic mapping of ultrashort reads
Stars: ✭ 45 (-13.46%)
Mutual labels: ngs
SigProfilerMatrixGeneratorSigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
Stars: ✭ 68 (+30.77%)
Mutual labels: cancer-genomics
CliqueSNVNo description or website provided.
Stars: ✭ 13 (-75%)
Mutual labels: ngs
The-Cancer-TargetomeInitial data release for drug-target interactions of the cancer targetome.
Stars: ✭ 12 (-76.92%)
Mutual labels: precision-medicine
ngs pipelineExome/Capture/RNASeq Pipeline Implementation using snakemake
Stars: ✭ 40 (-23.08%)
Mutual labels: ngs
rnftoolsRNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
Stars: ✭ 14 (-73.08%)
Mutual labels: ngs
SigProfilerSimulatorSigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Stars: ✭ 18 (-65.38%)
Mutual labels: cancer-genomics
bio-dockers🐳 Bio-dockers: dockerized bioinformatic tools
Stars: ✭ 33 (-36.54%)
Mutual labels: ngs
disqA library for manipulating bioinformatics sequencing formats in Apache Spark
Stars: ✭ 29 (-44.23%)
Mutual labels: ngs
STingUltrafast sequence typing and gene detection from NGS raw reads
Stars: ✭ 15 (-71.15%)
Mutual labels: ngs
