Top 26 cancer open source projects

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Web client for CIViC: Clinical Interpretations of Variants in Cancer

Multi-task deep learning framework for multi-omics data analysis

Provide R access to the NCI Genomic Data Commons portal.

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

An interactive web portal for exploring immuno-oncology data

3D hotspot mutation proximity analysis tool

Text mining cancer biomarkers for the CIVIC database

A Python-Tensorflow neural network for classifying cancer data

Cancer-dedicated gene set interpretation

List of IARC bioinformatics nextflow pipelines

A basic framework for pulmonary nodule detection and characterization in CT

Cancer Predisposition Sequencing Reporter (CPSR)

Gene fusion detection and visualization

TCGA data acquisition and processing for Project Cognoma

CNN histopathologic tumor identifier.

Backend Server for CIViC Project

Fast and accurate gene fusion detection from RNA-Seq data

A Slicer extension to provide a GUI around pyradiomics

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Aplicativo para o projeto "Anjos do SuperAção"