256 Open source projects that are alternatives of or similar to clinicadl

Slicer extensions index

Smart India Hackathon 2019 project given by the Department of Atomic Energy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

BIDScoin converts your source-level neuroimaging data to BIDS

Multi-platform, free open source software for visualization and image computing.

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Multi-platform, free open source software for visualization and image computing.

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Programming assignments, labs and quizzes from all courses in the Coursera AI for Medicine Specialization offered by deeplearning.ai

A framework for developing neural network models for 3D image processing.

Deep Learning Toolkit for Medical Image Analysis

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

Graph theory analysis of brain MRI data

Keras implementation of Character-level CNN for Text Classification

Automatically split the chest x-ray into two views

Kidney Tumor Segmentation Challenge 2019

TUM_MLMI_SS16: Convolutional Neural Network using U-Net architecture to predict one modality of a brain MRI scan from another modality.

Open Source EIT system using Keithley 6221 current source and EEG systems

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

PyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)

CS-Net (MICCAI 2019) and CS2-Net (MedIA 2020)

Brain Segmentation on MRBrains18

User-oriented public repository of Gate (macros, examples and user contributions)

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data

A jupyter widget for the cornerstone library to make showing flashy images with nice tools easier.

Method container for computational neuroscience on brains.

Malaria Detection using Deep Learning from Images made available publicly from NIH

Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"

Meta-repository of screening mammography classifiers

Pedestrian Detection using Non Maximum Suppression

CNN architecture for predicting DNA binding sites for Transcription Factors

Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT

Skin lesion detection from dermoscopic images using Convolutional Neural Networks

DICOM parser for golang

BisQue is an ML Platform for storing, analyzing, and visualizing your data all in the browser.

Repository for "AI/MD in Medicine" club in clubhouse

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.

Segmentation of prostate from MRI scans

The NeuroMorph analysis and visualization toolkit

A small TensorFlow project created to test some machine learning problems

DICOM Image Segmentation with CNNs in Tensorflow

Code for using CDEP from the paper "Interpretations are useful: penalizing explanations to align neural networks with prior knowledge" https://arxiv.org/abs/1909.13584

A generalizable application framework for segmentation, regression, and classification using PyTorch

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

No description or website provided.

This Repo containes the implemnetation of generating Guided-GradCAM for 3D medical Imaging using Nifti file in tensorflow 2.0. Different input files can be used in that case need to edit the input to the Guided-gradCAM model.

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

C++ Implementation of Image Super-Resolution using Convolutional Neural Network

Benchmarks on NIH Chest X-ray 14 dataset

An application displaying 2D/3D Dicom

Deep learning framework for MRI reconstruction

C++ library for simulation of multiscale neural field dynamics

Utility functions for working with DICOM and BIDS neuroimaging data

Pytorch Implementation of Depth Map Prediction from a Single Image using a Multi-Scale Deep Network

DICOM Viewer

Building an ACL tear detector to spot knee injuries from MRIs with PyTorch (MRNet)

PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of Volumetric Scans

NeuroInformatics Database