238 Open source projects that are alternatives of or similar to cpsr

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Query2Report is a simple open source business intelligence platform that allows users to build report/dashboard for business analytics or enterprise reporting

Personal Cancer Genome Reporter (PCGR)

pyreports is a python library that allows you to create complex report from various sources

Cancer-dedicated gene set interpretation

Backend Server for CIViC Project

Free Open Source Reporting tool for .NET6/.NET Core/.NET Framework that helps your application generate document-like reports

CellReport 是一个netcore实现的、以复杂统计报表为核心目标的制作、运行工具。支持数据看板、大屏制作。你可以使用数据库、excel文件、api服务、已有报表等为数据源，通过内置的集合函数组织数据，以类excel界面设计最终呈现结果。

Web client for CIViC: Clinical Interpretations of Variants in Cancer

A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)

Provides various Windows Server Active Directory (AD) security-focused reports.

convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations

Business Process eXecution Engine

calcardbackup: moved to https://codeberg.org/BernieO/calcardbackup

Librería para la evaluación de calidad de datos, e interacción con el portal de datos.gov.co

pathoscore evaluates variant pathogenicity tools and scores.

TCGA data acquisition and processing for Project Cognoma

Learning the Variant Call Format

ClassifyCNV: a tool for clinical annotation of copy-number variants

Finite State Machine porting from Stateless C#

FastReport Open Source Documentation

tools for reading, writing, merging, and remapping SNPs

Captures go test output and parses it into a single self-contained HTML file.

Allure Docker Service UI provides a friendly user interface for frankescobar/allure-docker-service API container.

Golang port for Allure test reporting tool

Fast and simple report generator, from JSON to pdf, xslx, docx, odt...

Zebrunner is a Test Automation Management Tool

A curated list of awesome things related to the Cadence and Temporal Workflow Engines

Powerful statistics for VCF files

📊Evaluating, filtering, comparing, and visualising VCF

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

Distributed, workflow-driven integration environment

Contextual AI adds explainability to different stages of machine learning pipelines - data, training, and inference - thereby addressing the trust gap between such ML systems and their users. It does not refer to a specific algorithm or ML method — instead, it takes a human-centric view and approach to AI.

CNN histopathologic tumor identifier.

Python workflow engine

⤴️ Steep Workflow Management System – Run scientific workflows in the Cloud

Backend server for Genome Nexus

TheEye Dockers and QuickStart

Spark VCF data source implementation for Dataframes

A novel management, annotation, and machine learning framework for analyzing cancer mutations

This bot helps users to mass report Instagram accounts

Python client for using Prefect Cloud with Saturn Cloud

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

a web system to allow users to automatically record history and manage complicated scientific workflows in web browsers involving the online spatial data facilities, high-performance computation platforms, and open-source libraries.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Postier is a Laravel API automation platform to transfer data and to sync apps. You can build workflows with data and actions of multiple apps and apply logics to the data!

A simple but powerful state machine implementation.

Fast and accurate gene fusion detection from RNA-Seq data

Gene fusion detection and visualization

simple viewer for variant call format using htslib

Temporal PHP SDK samples

Integration between Micronaut and Camunda (Workflow Engine). We configure Camunda with sensible defaults, so that you can get started with minimum configuration: simply add a dependency in your Micronaut project to embed the workflow engine!

funsies is a lightweight workflow engine 🔧

A Slicer extension to provide a GUI around pyradiomics

OpenACR is a digital native Accessibility Conformance Report (ACR). The initial development is based on Section 508 requirements. The main goal is to be able to compare the accessibility claims of digital products and services. A structured, self-validated, machine-readable documentation will provide for this.

Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

AI-based pathology predicts origins for cancers of unknown primary - Nature