729 Open source projects that are alternatives of or similar to CuteVCF

Spark VCF data source implementation for Dataframes

Scalable genomic data analysis.

Bayesian genotyper for structural variants

Home of the Genomic Feature and Variation Ontology (GFVO)

A Java API for high-throughput sequencing data (HTS) formats.

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

find large indels (in the blind spot between GATK/freebayes and SV callers)

annotate a VCF with other VCFs/BEDs/tabixed files

📊Evaluating, filtering, comparing, and visualising VCF

(WIP) best-practices workflow for rare disease

Efficient variant-call data storage and retrieval library using the TileDB storage library.

cython + htslib == fast VCF and BCF processing

A collection of scripts and notes related to genomics and bioinformatics

Numerical Encoding for Human Genetic Variants

Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

A DNA Sequence Alignment/Map (SAM) library for Clojure

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Haplotype VCF comparison tools

xHLA: Fast and accurate HLA typing from short read sequence data

Finds SNP sites from a multi-FASTA alignment file

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

Simple Super Mario in Allegro C++ & The Final Project of Course Advanced Programming

🚀 Handy dynamic styles utilities for React Native and React Native Web.

Visualisation toolbox based on Qt WebEngine and D3.js

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

Search for emojis in Krunner and copy/paste them

Open sound meter. FFT based application for tuning sound systems.

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Collection of scripts for bacterial genomics

use the noise

Seamless Augmented Reality module for QML using UchiyaMarkers

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Multi-threading logger for Qt applications

Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

XDrawChem is a two-dimensional molecule drawing program.

Experimental dependency-aware goal manager

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

Genome Annotation Without Nightmares

Harbol is a collection of data structure and miscellaneous libraries, similar in nature to C++'s Boost, STL, and GNOME's GLib

Keyboard key detection software realized by Qt（Qt实现的键盘按键检测软件）

A binary visualization tool to aid with reverse engineering and malware detection similar to Cantor.Dust

Biopython Jupyter Notebook tutorial to characterize a small genome

QML adaptor for Chart.js 2.x that supports startup animations and tooltips

Phage-Host Interaction Search Tool

An application that can handle the Hue Entertainment Areas on a Raspberry Pi

A secure encryption tool for genomic data

Google Benchmark Data Viewer

Markdown Editor in Qt 5

一个A-SOUL成员动态/直播提醒插件，支持监控B站与抖音动态，可在Windows10 - Windows11系统上运行。

simuG: a general-purpose genome simulator

High-performance error correction for Illumina resequencing data

Qt C++ alternative for handling async code execution

Genome-wide imputation pipeline

Easy genetic ancestry predictions in Python

This is simple browser application written on Qt & QtWebkit.

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Python package and CLI for whole-genome duplication related analyses

Acria Oracle Node Client implemented in C++/Qt

CLI to download Qt on headless systems