Top 27 variants open source projects

Unleash is the open source feature toggle service.

Web client for CIViC: Clinical Interpretations of Variants in Cancer

What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.

(WIP) best-practices workflow for rare disease

Simple tagged unions

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Genomics using open source tools, running on GCP or AWS

Variant types in TypeScript

Lollipop-diagram to interactively visualize genetic mutations

pathoscore evaluates variant pathogenicity tools and scores.

Numerical Encoding for Human Genetic Variants

Spark VCF data source implementation for Dataframes

Ordo: A minimalist language with row polymorphism

A phenotype-based tool for variant prioritization in WES and WGS data

VariantRetriever is a minimalist package for feature flagging

Multi-sample somatic variant caller

📊Evaluating, filtering, comparing, and visualising VCF

Backend Server for CIViC Project

simple viewer for variant call format using htslib

PEPPER-Margin-DeepVariant

Harbol is a collection of data structure and miscellaneous libraries, similar in nature to C++'s Boost, STL, and GNOME's GLib

🚀 Handy dynamic styles utilities for React Native and React Native Web.

Recursive Variant: A simple library for Recursive Variant Types

Rare variant test software for next generation sequencing data

A scalable styled-component theming system that fully leverages JavaScript as a language for styles authoring and theming at both local and global levels.

xHLA: Fast and accurate HLA typing from short read sequence data

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products