23 Open source projects that are alternatives of or similar to demuxalot

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

Single Cell Cluster Evaluation

Single Cell Analysis Pipelines

Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

A permissively licensed library designed to replace Illumina's Experiment Manager

Clustering scRNAseq by genotypes

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

Community-provided extensions to Seurat

Nanopore demultiplexing, QC and alignment pipeline

A comprehensive dimensional reduction framework to recover the latent topology from high-dimensional data.

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

The software behind Chai's open-source Real-Time PCR instrument

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)

BEER: Batch EffEct Remover for single-cell data

SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection

A collection of 50+ trajectory inference methods within a common interface 📥📤

Maximum likelihood demultiplexing

Comparison of dimensionality reduction methods

R package to visualize gene expression data based on weighted kernel density estimation

<<------ Use SnapATAC!!

Simulating single-cell data using gene regulatory networks 📠

Fast and accurate sequence demultiplexing