474 Open source projects that are alternatives of or similar to DRAM

ganon classifies short DNA sequences against large sets of genomic sequences efficiently, with download and update of references (RefSeq/Genbank), taxonomic (NCBI/GTDB) and hierarchical classification, customized reporting and more

A package for designing compact and comprehensive capture probe sets.

Predict AMPs in (meta)genomes and peptides

MaAsLin2: Microbiome Multivariate Association with Linear Models

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

Collection of scripts for bacterial genomics

R package for microbiome biomarker discovery

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Compare different differential abundance and expression methods

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

PHANOTATE: a tool to annotate phage genomes.

annotate a VCF with other VCFs/BEDs/tabixed files

GenomeTools genome analysis system.

An OpenSeadragon plugin for annotating high-res zoomable images

Phage-Host Interaction Search Tool

A tool for fast and accurate summarizing of variant calling format (VCF) files

A fast and scalable phylogenetic tree viewer for microbiome data analysis

OpenCV based DNN Object Detection Library for Openframeworks

This is the ensembldb development repository.

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

High-performance error correction for Illumina resequencing data

Seven Bridges Genomics aligner/caller debugging and analysis tools

Deep Extreme Cut http://www.vision.ee.ethz.ch/~cvlsegmentation/dextr . a tool to do automatically object segmentation from extreme points.

BACTpipe: An assembly and annotation pipeline for bacterial genomics

xHLA: Fast and accurate HLA typing from short read sequence data

Easy genetic ancestry predictions in Python

A WGS de novo assembler based on the FMD-index for large genomes

Genomics Workflows on AWS

Question Answering annotation platform - Plateforme d'annotation

Find target sites for the miRNAs in genomic sequences

Python modules and scripts for working with Concrete, a data serialization format for NLP

Highly performant data storage in C++ for importing, querying and transforming variant data with C/C++/Java/Spark bindings. Used in gatk4.

No description or website provided.

A model-based visualization method for microbiome data

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

simuG: a general-purpose genome simulator

Time series annotation library.

Finds SNP sites from a multi-FASTA alignment file

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Genome-wide imputation pipeline

The official tool for transforming doccano format into common dataset formats.

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

A DNA Sequence Alignment/Map (SAM) library for Clojure

目标检测数据集标注工具

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

The Hypothesis browser extensions.

Scala compiler plugin for warning suppression

Python package and CLI for whole-genome duplication related analyses

🍳 Recipes for the Prodigy, our fully scriptable annotation tool

Add PHP annotation support for PhpStorm and IntelliJ

a neovim comment and annotation plugin using coroutine

Create 3D labelled bounding boxes in RViz

From genomes to phenotypes: Traitar, the microbial trait analyzer

ERRor ANnotation Toolkit: Automatically extract and classify grammatical errors in parallel original and corrected sentences.

PointCloud Annotation Tools, support to label object bound box, ground, lane and kerb

Fast in-silico normalization algorithm for NGS data

Serialize / Deserialize Dart Objects to / from JSON