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All Projects → Russel88 → DAtest

Russel88 / DAtest

Licence: GPL-3.0 License
Compare different differential abundance and expression methods

Programming Languages

r
7636 projects

Labels

metagenomicsrnaseqaucproteomicsmetabolomicsmicrobiomefalse-positive-controldifferential-expression16sotumarker-gene-analysisrelative-abundancescompare-methodsdifferential-abundance-methods

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Travis Build Status Project Status: Active - The project has reached a stable, usable state and is being actively developed. Package-License

DAtest

DAtest is a package for comparing different differential abundance methods used in microbial marker-gene (e.g. 16S rRNA), RNA-seq and protein/metabolite abundance analysis.

There are many methods for testing differential abundance and no gold standard, but results can vary a lot between the different statistical methods. This package aims at aiding the analyst in choosing a method for a specific dataset based on empirical testing.

Check the wiki for details on installation and usage of this package

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