pathoscorepathoscore evaluates variant pathogenicity tools and scores.
Stars: ✭ 21 (+10.53%)
variantkeyNumerical Encoding for Human Genetic Variants
Stars: ✭ 32 (+68.42%)
spark-vcfSpark VCF data source implementation for Dataframes
Stars: ✭ 15 (-21.05%)
ordoOrdo: A minimalist language with row polymorphism
Stars: ✭ 50 (+163.16%)
phenomenet-vpA phenotype-based tool for variant prioritization in WES and WGS data
Stars: ✭ 31 (+63.16%)
VariantRetrieverVariantRetriever is a minimalist package for feature flagging
Stars: ✭ 23 (+21.05%)
needlestackMulti-sample somatic variant caller
Stars: ✭ 45 (+136.84%)
vcf stuff📊Evaluating, filtering, comparing, and visualising VCF
Stars: ✭ 19 (+0%)
civic-serverBackend Server for CIViC Project
Stars: ✭ 39 (+105.26%)
CuteVCFsimple viewer for variant call format using htslib
Stars: ✭ 30 (+57.89%)
pepperPEPPER-Margin-DeepVariant
Stars: ✭ 179 (+842.11%)
HarbolHarbol is a collection of data structure and miscellaneous libraries, similar in nature to C++'s Boost, STL, and GNOME's GLib
Stars: ✭ 18 (-5.26%)
pulsar-core🚀 Handy dynamic styles utilities for React Native and React Native Web.
Stars: ✭ 27 (+42.11%)
ezancestryEasy genetic ancestry predictions in Python
Stars: ✭ 38 (+100%)
recursive-variantRecursive Variant: A simple library for Recursive Variant Types
Stars: ✭ 67 (+252.63%)
rvtestsRare variant test software for next generation sequencing data
Stars: ✭ 114 (+500%)
styled-variantsA scalable styled-component theming system that fully leverages JavaScript as a language for styles authoring and theming at both local and global levels.
Stars: ✭ 19 (+0%)
HLAxHLA: Fast and accurate HLA typing from short read sequence data
Stars: ✭ 84 (+342.11%)
indigoIndigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Stars: ✭ 26 (+36.84%)
UnleashUnleash is the open source feature toggle service.
Stars: ✭ 4,679 (+24526.32%)
civic-clientWeb client for CIViC: Clinical Interpretations of Variants in Cancer
Stars: ✭ 49 (+157.89%)
witty.erWhat is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
Stars: ✭ 22 (+15.79%)
rare-disease-wf(WIP) best-practices workflow for rare disease
Stars: ✭ 47 (+147.37%)
tagmemeSimple tagged unions
Stars: ✭ 21 (+10.53%)
MTBseq sourceMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Stars: ✭ 26 (+36.84%)
TeamTeriGenomics using open source tools, running on GCP or AWS
Stars: ✭ 30 (+57.89%)
variantVariant types in TypeScript
Stars: ✭ 147 (+673.68%)
covvizMulti-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
Stars: ✭ 42 (+121.05%)