119 Open source projects that are alternatives of or similar to ganon

Remove contaminated contigs from genomes using k-mers and taxonomies.

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Compare different differential abundance and expression methods

MaAsLin2: Microbiome Multivariate Association with Linear Models

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

R package for microbiome biomarker discovery

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

🎛️ Use RedisBloom in PHP!

Interesting (non-cryptographic) hashes implemented in pure Python.

A fast and scalable phylogenetic tree viewer for microbiome data analysis

WebPKI-level Certificate Revocation via Multi-Level Bloom Filter Cascade

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

A compressed, associative, exact, and weighted dictionary for k-mers.

🔬 Assemble large genomes using short reads

Bonsai: Fast, flexible taxonomic analysis and classification

Probabilistic data structures in Pharo Smalltalk.

Sketching Algorithms for Clojure (bloom filter, min-hash, hyper-loglog, count-min sketch)

Privacy-preserving Firefox extension linking to Hacker News discussion; built with Bloom filters and WebAssembly

Cuckoo Filter go implement, better than Bloom Filter, configurable and space optimized 布谷鸟过滤器的Go实现，优于布隆过滤器，可以定制化过滤器参数，并进行了空间优化

高性能的分布式的专门空间优化的 Bitmap 服务, 高效检查数据是否存在,日活统计，签到，打点等等

Data-Structures using C++.

Go Client for RedisBloom probabilistic module

Java Client for RedisBloom probabilistic module

Verified hash-based AMQ structures in Coq

✏️ultra fast and scalable genome assembly polishing

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

A model-based visualization method for microbiome data

gargammel is an ancient DNA simulator

fast, extensible, versatile event router for Suricata's EVE-JSON format

No description or website provided.

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

Strain-level abundances estimation in metagenomic samples using variation graphs

Fast Bloom filter with concurrent accessibility, powered by :atomics module.

JS implementation of probabilistic data structures: Bloom Filter (and its derived), HyperLogLog, Count-Min Sketch, Top-K and MinHash

A simple and small bloom filter implementation in plain C.

Cross-disease comparison of case-control gut microbiome studies

Hashing-function agnostic Cuckoo filters for Redis

Erlang nif for xor_filter. 'Faster and Smaller Than Bloom and Cuckoo Filters'.

Fast Python Bloom Filter using Mmap

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

Blockchain as intended

Collection of commonly used RDP Tools for easy building

🔍 Tiny, full-text search engine for static websites built with Rust and Wasm

High-speed Bloom filters and taffy filters for C, C++, and Java

A Minimal Perfect Hash Function Library

个人工具汇总：一致性哈希工具，Bitmap工具，布隆过滤器参数生成器，Yaml和properties互转工具，一键式生成整个前后端工具，单机高性能幂等工具，zookeeper客户端工具，分布式全局id生成器，时间转换工具，Http封装工具

Swift Collection Data Structures Library

Bloom filter implementation in Crystal lang

Proof of Work with SHA256 and Bloom filter

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

High-performance, concurrent, and mutable Cuckoo Filter for Erlang and Elixir

Probabilistic data structures for processing continuous, unbounded streams.

From genomes to phenotypes: Traitar, the microbial trait analyzer

Study group for algorithms in Ruby, hosted at App Academy

🌺 A pure Elixir implementation of Scalable Bloom Filters

Fast in-silico normalization algorithm for NGS data

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

Meta-Omics Software for Community Analysis