788 Open source projects that are alternatives of or similar to Goleft

A modern genome browser built with JavaScript and HTML5.

A collection of publications on comparison of high-throughput sequencing technologies.

Efficient variant-call data storage and retrieval library using the TileDB storage library.

A comprehensive tutorial about GWAS and PRS

Bioinformatics library for .NET

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Bayesian haplotype-based mutation calling

Python and C++ code for reading and writing genomics data.

Flexible genotype query among 30,000+ samples whole-genome

Genomics Extension for SQLite

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Code examples of fast and simple k-mer counters for tutorial purposes

A high-performance, Pythonic language for bioinformatics

A fast and sensitive gapped read aligner

Efficient pythonic random access to fasta subsequences

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Tools to process and analyze deep sequencing data.

Python library to facilitate genome assembly, annotation, and comparative genomics

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Model and predict short DNA sequence features with neural networks

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

An interactive web tool for quality control of DNA sequencing data

A collection of scripts and notes related to genomics and bioinformatics

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

A curated list of bioinformatics bench-marking papers and resources.

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

A React web application to query and share any PostgreSQL database.

An open source platform for managing and analyzing biomedical big data

annotate a VCF with other VCFs/BEDs/tabixed files

Ultra-fast and memory-efficient (meta-)genome assembler

Java utilities for Bioinformatics

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Scripts to download genomes from the NCBI FTP servers

The next version of bwa-mem

Data intensive science for everyone.

Scalable genomic data analysis.

nim wrapper for htslib for parsing genomics data files

Example client programs for Saphetor's VarSome annotation API

Analysis pipelines for sequencing data

Official code repository for GATK versions 4 and up

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Bayesian genotyper for structural variants

A fast whole-genome aligner based on de Bruijn graphs

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Randomly subsample sequencing reads to a specified coverage

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Inference of ploidy and heterozygosity structure using whole genome sequencing data

A cool place to store your Hi-C

Antimicrobial Resistance Identification By Assembly

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

A versatile pairwise aligner for genomic and spliced nucleotide sequences

GCP Essentials for Bioinformatics Researchers

NGLess: NGS with less work

A tool to circularize genome assemblies