Scripts🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
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sciviewsciview is a tool for visualization and interaction with ND image and mesh data
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MorphoLibJCollection of mathematical morphology methods and plugins for ImageJ
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imagingbook-publicImage processing software for textbooks by W. Burger & M. Burge
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BoneJ2Plugins for bone image analysis
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knipKNIME Image Processing Extension
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imagingbook-commonCommon Java library for digital image processing books by Burger & Burge (OBSOLETE!)
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burp-copy-as-ffufBurp Extension that copies a request and builds a FFUF skeleton
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FAIRYFast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
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OMETIFF.jlI/O operations for OME-TIFF files in Julia
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PySiddhiPython wrapper for Siddhi engine
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Python-for-Bioimage-AnalysisThis is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
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TexturizeA unified framework for example-based texture synthesis, developed alongside my master's thesis.
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TOADAI-based pathology predicts origins for cancers of unknown primary - Nature
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PengueeBotAutomation tool, visit our discord channel if you have anything to ask
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WDRJython framework aiming for simplified WebSphere Application Server scripting
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opencv-rolling-ballFully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.
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flikaAn interactive image processing program for biologists written in Python.
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VirtualenvVirtual Python Environment builder
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deepflash2A deep-learning pipeline for segmentation of ambiguous microscopic images.
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