BoneJ2Plugins for bone image analysis
opencv-rolling-ballFully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.
flikaAn interactive image processing program for biologists written in Python.
knipKNIME Image Processing Extension
Scripts🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
imagingbook-commonCommon Java library for digital image processing books by Burger & Burge (OBSOLETE!)
sciviewsciview is a tool for visualization and interaction with ND image and mesh data
MorphoLibJCollection of mathematical morphology methods and plugins for ImageJ