Scripts🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
Stars: ✭ 18 (-10%)
Mutual labels: imagej, microscopy
ImSwitchImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Stars: ✭ 43 (+115%)
Mutual labels: fluorescence, microscopy
sciviewsciview is a tool for visualization and interaction with ND image and mesh data
Stars: ✭ 50 (+150%)
Mutual labels: imagej
imagej macros and scriptsImageJ macros and scripts written at the imaging facility MRI
Stars: ✭ 19 (-5%)
Mutual labels: imagej
LLSpyLattice light-sheet post-processing utility.
Stars: ✭ 19 (-5%)
Mutual labels: microscopy
micromanager-samplesPython samples for Micro-Manager: image acquisition and microscope control system
Stars: ✭ 19 (-5%)
Mutual labels: microscopy
atomaiDeep and Machine Learning for Microscopy
Stars: ✭ 77 (+285%)
Mutual labels: microscopy
axondeepsegAxon/Myelin segmentation using Deep Learning
Stars: ✭ 102 (+410%)
Mutual labels: microscopy
multilayer-perceptronLibrary to make and train a concurrent multilayer perceptron
Stars: ✭ 46 (+130%)
Mutual labels: neurons
napari-aicsimageioMultiple file format reading directly into napari using pure Python
Stars: ✭ 18 (-10%)
Mutual labels: microscopy
cellfinderAutomated 3D cell detection and registration of whole-brain images
Stars: ✭ 122 (+510%)
Mutual labels: microscopy
imagingbook-commonCommon Java library for digital image processing books by Burger & Burge (OBSOLETE!)
Stars: ✭ 13 (-35%)
Mutual labels: imagej
GPimGaussian processes and Bayesian optimization for images and hyperspectral data
Stars: ✭ 29 (+45%)
Mutual labels: microscopy
CorBinianCorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations
Stars: ✭ 15 (-25%)
Mutual labels: neurons
knipKNIME Image Processing Extension
Stars: ✭ 45 (+125%)
Mutual labels: imagej
treestoolboxTREES toolbox
Stars: ✭ 20 (+0%)
Mutual labels: neurons
OADCollection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Stars: ✭ 90 (+350%)
Mutual labels: microscopy
Edge-Detection-projectTiny Image in Javascript - Edge Detection Algorithms
Stars: ✭ 27 (+35%)
Mutual labels: imagej
spiketorchExperiments with spiking neural networks (SNNs) in PyTorch. See https://github.com/BINDS-LAB-UMASS/bindsnet for the successor to this project.
Stars: ✭ 83 (+315%)
Mutual labels: neurons
BrainModelsBrain models implementation with BrainPy
Stars: ✭ 36 (+80%)
Mutual labels: neurons