820 Open source projects that are alternatives of or similar to Metacache

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

GenomeTools genome analysis system.

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

Next generation sequencing reads de novo assembler.

Python module for average nucleotide identity analyses

Official code repository for GATK versions 4 and up

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

🌈Scaffold genome sequence assemblies using linked read sequencing data

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

A package for designing compact and comprehensive capture probe sets.

🔬 Assemble large genomes using short reads

A genome browser that shows long reads and complex variants better

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Curated list of Machine Learning, NLP, Vision, Recommender Systems Project Ideas

A Python package for time series classification

Python and C++ code for reading and writing genomics data.

A scikit-learn based module for multi-label et. al. classification

Data augmentation for NLP, presented at EMNLP 2019

This is a Flask app that can classify images of dog and cat. The underlying model is a CNN trained using Keras framework

Deep neural network framework for multi-label text classification

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

Skin cancer classification using Inceptionv3

Reproduce simple cv project including attention module, classification, object detection, segmentation, keypoint detection, tracking 😄 etc.

A plotly.js React component from Plotly 📈

DEPRECIATED! Please use nf-core/tools instead

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

(formerly eelpond) an automated RNA-Seq workflow system

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Data and analysis for the Splatter paper

All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN

MobileNetV3 in pytorch and ImageNet pretrained models

A Python package for fast operations on 1-dimensional genomic signal tracks

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

JAMP - Just Another Metabarcoding Pipeline

A robust model for quantitative comparison of ChIP-Seq data sets.

Statistical Machine Intelligence & Learning Engine

Collection of tasks for fast prototyping, baselining, finetuning and solving problems with deep learning.

https://www.kaggle.com/c/humpback-whale-identification

A wrapper for the EnsEMBL REST API

(No maintenance) Detect gene fusion directly from raw fastq files

Algorithms to automatically discover stops and moves in GPS trajectories.

Robust, flexible and resource-efficient pipelines using Go and the commandline

Unix, R and python tools for genomics and data science

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

Data intensive science for everyone.

Automated Machine Learning [AutoML] with Python, scikit-learn, Keras, XGBoost, LightGBM, and CatBoost

List of Computer Science courses with video lectures.

Gesture Recognition using TensorFlow

Toolkit for processing sequences in FASTA/Q formats

C library for high-throughput sequencing data formats

Examples use case of PHP-ML library.

Image Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).

Weaviate is a cloud-native, modular, real-time vector search engine

🤖 A portable, header-only, artificial neural network library written in C99

🎵 Using Deep Learning to Categorize Music as Time Progresses Through Spectrogram Analysis

highly-efficient & lightweight mutation signature matrix aggregation