398 Open source projects that are alternatives of or similar to Mixcr

GO enrichment with python -- pandas meets networkx

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

MyGene.info: A BioThings API for gene annotations

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

A fast whole-genome aligner based on de Bruijn graphs

Python module for average nucleotide identity analyses

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Flexible genotype query among 30,000+ samples whole-genome

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SortMeRNA: next-generation sequence filtering and alignment tool

compacted de Bruijn graph construction in low memory

ECG classification programs based on ML/DL methods

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Genome inference from a population reference graph

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Code examples of fast and simple k-mer counters for tutorial purposes

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Analysis pipelines for sequencing data

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GCP Essentials for Bioinformatics Researchers

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

A comprehensive library for computational molecular biology

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Race and ethnicity Imputation from Disease history with Deep LEarning

Create regional association plots from GWAS or meta-analysis

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

GeneValidator: Identify problems with predicted genes

Genomics Extension for SQLite

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Comprehensive toolkit for generating various numerical features of protein sequences

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Snakemake-based workflow for detecting structural variants in WGS data

NGLess: NGS with less work

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A curated list of awesome Bioinformatics libraries and software.

A lightweight immune repertoire browser

Fast multi-line FASTA/Q reader in several programming languages

Post-analysis of immune repertoire sequencing data

R package for analyzing single-cell RNA-seq data

Package for fetching metadata and downloading data from SRA/ENA/GEO

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Simple simulation of single-cell RNA sequencing data

An efficient FASTQ manipulation suite

Structural variant toolkit for VCFs