All Projects → Mixcr → Similar Projects or Alternatives

398 Open source projects that are alternatives of or similar to Mixcr

Pretzel
Javascript full-stack framework for Big Data visualisation and analysis
Stars: ✭ 26 (-82.43%)
Mutual labels:  bioinformatics
Bioconda Recipes
Conda recipes for the bioconda channel.
Stars: ✭ 1,247 (+742.57%)
Mutual labels:  bioinformatics
Pyensemblrest
A wrapper for the EnsEMBL REST API
Stars: ✭ 25 (-83.11%)
Mutual labels:  bioinformatics
Bio4j
Bio4j abstract model and general entry point to the project
Stars: ✭ 113 (-23.65%)
Mutual labels:  bioinformatics
Fermi2
Stars: ✭ 23 (-84.46%)
Mutual labels:  bioinformatics
Squigglekit
SquiggleKit: A toolkit for manipulating nanopore signal data
Stars: ✭ 81 (-45.27%)
Mutual labels:  bioinformatics
Elvers
(formerly eelpond) an automated RNA-Seq workflow system
Stars: ✭ 22 (-85.14%)
Mutual labels:  bioinformatics
Masurca
Stars: ✭ 128 (-13.51%)
Mutual labels:  bioinformatics
Helmsman
highly-efficient & lightweight mutation signature matrix aggregation
Stars: ✭ 19 (-87.16%)
Mutual labels:  bioinformatics
Goenrich
GO enrichment with python -- pandas meets networkx
Stars: ✭ 80 (-45.95%)
Mutual labels:  bioinformatics
Cookiecutter
DEPRECIATED! Please use nf-core/tools instead
Stars: ✭ 18 (-87.84%)
Mutual labels:  bioinformatics
Bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Stars: ✭ 112 (-24.32%)
Mutual labels:  bioinformatics
Pybedgraph
A Python package for fast operations on 1-dimensional genomic signal tracks
Stars: ✭ 17 (-88.51%)
Mutual labels:  bioinformatics
Mygene.info
MyGene.info: A BioThings API for gene annotations
Stars: ✭ 79 (-46.62%)
Mutual labels:  bioinformatics
Scipipe
Robust, flexible and resource-efficient pipelines using Go and the commandline
Stars: ✭ 826 (+458.11%)
Mutual labels:  bioinformatics
Hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Stars: ✭ 134 (-9.46%)
Mutual labels:  bioinformatics
Seqtk
Toolkit for processing sequences in FASTA/Q formats
Stars: ✭ 799 (+439.86%)
Mutual labels:  bioinformatics
Sibeliaz
A fast whole-genome aligner based on de Bruijn graphs
Stars: ✭ 76 (-48.65%)
Mutual labels:  bioinformatics
Hail
Scalable genomic data analysis.
Stars: ✭ 706 (+377.03%)
Mutual labels:  bioinformatics
Pyani
Python module for average nucleotide identity analyses
Stars: ✭ 111 (-25%)
Mutual labels:  bioinformatics
Cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Stars: ✭ 655 (+342.57%)
Mutual labels:  bioinformatics
Oswitch
Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
Stars: ✭ 75 (-49.32%)
Mutual labels:  bioinformatics
Khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Stars: ✭ 640 (+332.43%)
Mutual labels:  bioinformatics
Plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Salentin et al. (2015), https://www.doi.org/10.1093/nar/gkv315
Stars: ✭ 123 (-16.89%)
Mutual labels:  bioinformatics
Getting Started With Genomics Tools And Resources
Unix, R and python tools for genomics and data science
Stars: ✭ 587 (+296.62%)
Mutual labels:  bioinformatics
Flowr
Robust and efficient workflows using a simple language agnostic approach
Stars: ✭ 73 (-50.68%)
Mutual labels:  bioinformatics
Cs Video Courses
List of Computer Science courses with video lectures.
Stars: ✭ 27,209 (+18284.46%)
Mutual labels:  bioinformatics
Pegasus
Pegasus Workflow Management System - Automate, recover, and debug scientific computations.
Stars: ✭ 110 (-25.68%)
Mutual labels:  bioinformatics
Ncbi Genome Download
Scripts to download genomes from the NCBI FTP servers
Stars: ✭ 494 (+233.78%)
Mutual labels:  bioinformatics
Bgt
Flexible genotype query among 30,000+ samples whole-genome
Stars: ✭ 72 (-51.35%)
Mutual labels:  bioinformatics
Bioawk
BWK awk modified for biological data
Stars: ✭ 462 (+212.16%)
Mutual labels:  bioinformatics
Awesome Bioinformatics Benchmarks
A curated list of bioinformatics bench-marking papers and resources.
Stars: ✭ 142 (-4.05%)
Mutual labels:  bioinformatics
Deeptools
Tools to process and analyze deep sequencing data.
Stars: ✭ 448 (+202.7%)
Mutual labels:  bioinformatics
Awesome Expression Browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
Stars: ✭ 72 (-51.35%)
Mutual labels:  bioinformatics
Mmseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Stars: ✭ 441 (+197.97%)
Mutual labels:  bioinformatics
Sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
Stars: ✭ 108 (-27.03%)
Mutual labels:  bioinformatics
Circosjs
d3 library to build circular graphs
Stars: ✭ 436 (+194.59%)
Mutual labels:  bioinformatics
Bcalm
compacted de Bruijn graph construction in low memory
Stars: ✭ 69 (-53.38%)
Mutual labels:  bioinformatics
Containers
Bioinformatics containers
Stars: ✭ 435 (+193.92%)
Mutual labels:  bioinformatics
Deepecg
ECG classification programs based on ML/DL methods
Stars: ✭ 124 (-16.22%)
Mutual labels:  bioinformatics
Sambamba
Tools for working with SAM/BAM data
Stars: ✭ 409 (+176.35%)
Mutual labels:  bioinformatics
Arcs
🌈Scaffold genome sequence assemblies using linked read sequencing data
Stars: ✭ 67 (-54.73%)
Mutual labels:  bioinformatics
Jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
Stars: ✭ 404 (+172.97%)
Mutual labels:  bioinformatics
Bedtk
A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
Stars: ✭ 103 (-30.41%)
Mutual labels:  bioinformatics
Bowtie2
A fast and sensitive gapped read aligner
Stars: ✭ 365 (+146.62%)
Mutual labels:  bioinformatics
Gramtools
Genome inference from a population reference graph
Stars: ✭ 65 (-56.08%)
Mutual labels:  bioinformatics
Plantcv
Plant image analysis using OpenCV
Stars: ✭ 352 (+137.84%)
Mutual labels:  bioinformatics
Octopus
Bayesian haplotype-based mutation calling
Stars: ✭ 131 (-11.49%)
Mutual labels:  bioinformatics
Megahit
Ultra-fast and memory-efficient (meta-)genome assembler
Stars: ✭ 343 (+131.76%)
Mutual labels:  bioinformatics
Lambda
LAMBDA – the Local Aligner for Massive Biological DatA
Stars: ✭ 59 (-60.14%)
Mutual labels:  bioinformatics
Grakel
A scikit-learn compatible library for graph kernels
Stars: ✭ 330 (+122.97%)
Mutual labels:  bioinformatics
Pymzml
pymzML - an interface between Python and mzML Mass spectrometry Files
Stars: ✭ 100 (-32.43%)
Mutual labels:  bioinformatics
Dna Nn
Model and predict short DNA sequence features with neural networks
Stars: ✭ 59 (-60.14%)
Mutual labels:  bioinformatics
Scde
R package for analyzing single-cell RNA-seq data
Stars: ✭ 147 (-0.68%)
Mutual labels:  bioinformatics
Pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
Stars: ✭ 146 (-1.35%)
Mutual labels:  bioinformatics
Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Stars: ✭ 135 (-8.78%)
Mutual labels:  bioinformatics
Splatter
Simple simulation of single-cell RNA sequencing data
Stars: ✭ 128 (-13.51%)
Mutual labels:  bioinformatics
Fqtools
An efficient FASTQ manipulation suite
Stars: ✭ 114 (-22.97%)
Mutual labels:  bioinformatics
Truvari
Structural variant toolkit for VCFs
Stars: ✭ 85 (-42.57%)
Mutual labels:  bioinformatics
16gt
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Stars: ✭ 26 (-82.43%)
Mutual labels:  bioinformatics
121-180 of 398 similar projects