435 Open source projects that are alternatives of or similar to NGI-RNAseq

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

A graphical user interface for distributed data processing of high throughput genomics

RNASeq pipeline

RNA-seq analysis pipeline for detection gene-fusions

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

A proof of concept RNA-Seq pipeline with Nextflow

An automated RNA-seq pipeline using Nextflow

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

A rapid http(s) benchmark tool written in Go

Catalyst.Classification

An example of how to run Rails CI and test steps in parallel with Docker and Buildkite

Towhee is a framework that is dedicated to making neural data processing pipelines simple and fast.

This code is used to build & run a Docker container for performing predictions against a Spark ML Pipeline.

Framework for Creating Pipeline Software

Google Classroom Data Pipeline

A python library to manipulate and transform indexable data (lists, arrays, ...)

Use AutoAI to detect fraud

Content builder library for MonoGame.

Plugin for Jenkins v2.138.2 or later, that triggers job builds on Bitbucket's push and pull request events.

Make it possible to chain regular functions

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.

pipen - A pipeline framework for python

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

tfa is a 2fa cli tool that aims to help you to generate 2fa code on CI/CD pipelines.

Open solution to the Google AI Object Detection Challenge 🍁

List of IARC bioinformatics nextflow pipelines

No description or website provided.

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

A pipeline for the computational evaluation of RNA-Seq data

HTML processing filters and utilities in Go version

A curated collection of publicly available resources on how companies around the world practice DevOps

create a jenkins pipeline which uses terraform to manage AWS resources

🚀 Automate versioning, changelog creation, README updates and GitHub releases using GitHub Actions,npm, docker or bash.

A pipelined implementation of the MIPS processor featuring hazard detection as well as forwarding

Continuous Integration Platform

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

Extensible streaming ingestion pipeline on top of Apache Spark

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

Show Me A Graph - Command Line Graphing

Reference-based transcript discovery from long RNA read

K3ai-core is the core library for the GO installer. Go installer will replace the current bash installer

Node & Express Demo App for Azure DevOps

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

A library to facilitate machine learning on multi-dimensional images.

Nanopore demultiplexing, QC and alignment pipeline

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

Cloud-native pipelines leveraging Concourse, Pivotal Build Service and Spinnaker to deploy apps

CWL tools and workflows for GGR

A proof of concept of RNAseq pipeline

🇨🇳 MyDataHarbor是一个致力于解决任意数据源到任意数据源的分布式、高扩展性、高性能、事务级的数据同步中间件。帮助用户可靠、快速、稳定的对海量数据进行准实时增量同步或者定时全量同步，主要定位是为实时交易系统服务，亦可用于大数据的数据同步（ETL领域）。

A pure bash clojureish CI pipeline

Make your data processing easy

WebRISC-V: A Web-Based Education-Oriented RISC-V Pipeline Simulation Environment [PHP]

🐍 Snakefiles for common RNA-seq data analysis workflows.

A minimal example data analysis project with the targets R package

Python toolkit for building restartable pipelines

🔬 De novo assembly of nanopore reads using nextflow