IsoQuantReference-based transcript discovery from long RNA read
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Mutual labels: rna-seq, transcriptomics
graphsimR package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
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Mutual labels: genomics, genetics
MetaOmGraphMetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
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Mutual labels: rna-seq, transcriptomics
bacnetBACNET is a Java based platform to develop website for multi-omics analysis
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Mutual labels: genomics, transcriptomics
manhattan generatorManhattan plot Generator
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Mutual labels: genomics, genetics
TransPiTransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
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Mutual labels: rna-seq, transcriptomics
dropClustVersion 2.1.0 released
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Mutual labels: rna-seq, genomics
region-plotA tool to plot significant regions of GWAS
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Mutual labels: genomics, genetics
scCATCHAutomatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
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Mutual labels: rna-seq, transcriptomics
genipeGenome-wide imputation pipeline
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Mutual labels: genomics, genetics
cell-ontologyAn ontology of cell types
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Mutual labels: genomics, transcriptomics
pipeline-pinfish-analysisPipeline for annotating genomes using long read transcriptomics data with pinfish
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Mutual labels: rna-seq, transcriptomics
awesome-geneticsA curated list of awesome bioinformatics software.
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Mutual labels: genomics, genetics
RATTLEReference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
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Mutual labels: rna-seq, genomics
HumanIdiogramLibraryResource of human chromosome schematics & images
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Mutual labels: genomics, genetics
alevin-fry🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
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Mutual labels: rna-seq, transcriptomics
MINTIEMethod for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
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Mutual labels: rna-seq, transcriptomics
fwdpy11Forward-time simulation in Python using fwdpp
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Mutual labels: genomics, genetics
pychopperA tool to identify, orient, trim and rescue full length cDNA reads
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Mutual labels: rna-seq, transcriptomics
heidiheidi : tidy data in Haskell
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Mutual labels: data-mining