81 Open source projects that are alternatives of or similar to ngsLD

Project metadata manager for PEPs in Python

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Method to optimally select samples for validation and resequencing

A package for designing compact and comprehensive capture probe sets.

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Scalable long read self-correction and assembly polishing with multiple sequence alignment

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

A set of command line tools based on R and JavaScript.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

A simple tool to calculate reads number and total base count in FASTQ file

Reference-based transcript discovery from long RNA read

List of IARC bioinformatics nextflow pipelines

A handy variant calling pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

Efficient handling of FASTQ files from Python

Whole Exome/Whole Genome Sequencing alignment pipeline

A scalable bacterial genome assembly, annotation and analysis pipeline

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Genotyping of segregating mobile elements insertions