FgbioTools for working with genomic and high throughput sequencing data.
Stars: ✭ 166 (+472.41%)
Mutual labels: bioinformatics, ngs
CremaMeta data server & client tools for game development
Stars: ✭ 61 (+110.34%)
Mutual labels: metadata, metadata-management
AfterqcAutomatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Stars: ✭ 169 (+482.76%)
Mutual labels: bioinformatics, ngs
UgeneUGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (+286.21%)
Mutual labels: bioinformatics, ngs
go-xmpA native Go SDK for the Extensible Metadata Platform (XMP)
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Mutual labels: metadata, metadata-management
NglessNGLess: NGS with less work
Stars: ✭ 115 (+296.55%)
Mutual labels: bioinformatics, ngs
Obofoundry.github.ioMetadata and website for the Open Bio Ontologies Foundry Ontology Registry
Stars: ✭ 85 (+193.1%)
Mutual labels: metadata, bioinformatics
FastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Stars: ✭ 966 (+3231.03%)
Mutual labels: bioinformatics, ngs
catchA package for designing compact and comprehensive capture probe sets.
Stars: ✭ 55 (+89.66%)
Mutual labels: bioinformatics, ngs
atroposAn NGS read trimming tool that is specific, sensitive, and speedy. (production)
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Mutual labels: bioinformatics, ngs
BioconvertBioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Stars: ✭ 112 (+286.21%)
Mutual labels: bioinformatics, ngs
OpenGene.jl(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Stars: ✭ 60 (+106.9%)
Mutual labels: bioinformatics, ngs
GatkOfficial code repository for GATK versions 4 and up
Stars: ✭ 1,002 (+3355.17%)
Mutual labels: bioinformatics, ngs
ScdeR package for analyzing single-cell RNA-seq data
Stars: ✭ 147 (+406.9%)
Mutual labels: bioinformatics, ngs
MigmapHTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Stars: ✭ 38 (+31.03%)
Mutual labels: bioinformatics, ngs
DeepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stars: ✭ 2,404 (+8189.66%)
Mutual labels: bioinformatics, ngs
ManormA robust model for quantitative comparison of ChIP-Seq data sets.
Stars: ✭ 16 (-44.83%)
Mutual labels: bioinformatics, ngs
Fusiondirect.jl(No maintenance) Detect gene fusion directly from raw fastq files
Stars: ✭ 23 (-20.69%)
Mutual labels: bioinformatics, ngs
PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stars: ✭ 17 (-41.38%)
Mutual labels: bioinformatics, ngs
SVCollectorMethod to optimally select samples for validation and resequencing
Stars: ✭ 20 (-31.03%)
Mutual labels: bioinformatics, ngs
