229 Open source projects that are alternatives of or similar to Niffler

Emory BMI GSoC Project Ideas

Julia package for reading and writing DICOM (Digital Imaging and Communications in Medicine) files

WolfPACS is an DICOM load balancer written in Erlang.

a browser-based DICOM viewer

Chinese translation of DICOM standard， DICOM协议中文版

DICOM utilities for anonymizing, viewing and uploading to a PACS

RESTful PACS server with plugins

Easy to use DICOMWEB enabled PACS with DIMSE services based on sqlite database

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.

node js native addon for dimse services

👀 Tobii Eye Tracker 4C Setup

Anonymization of legal cases (Fr) based on Flair embeddings

A GitHub Action to wrap Nrwl Nx commands in your workflows.

A mysqldump anonymizer

Allows you to pipe data from mysqldump or an SQL file and anonymize it.

Facilitates DICOM data access.

A universal tool for translating sensitive production database dumps into anonymized copies.

Anonymize data in your PostgreSQL dabatase with ease

macOS Xcode GLSL Volume Render for NIfTI, Bio-Rad Pic, NRRD, Philips, ITK MetaImage, AFNI, Freesurfer, DICOM images.

Github action to retrieve branch or tag names with support for all events.

Repository for my tutorial course: Grunt.js Web Workflows on LinkedIn Learning and Lynda.com.

Connect to GitHub Actions VM via SSH for interactive debugging

Image-based COVID-19 diagnosis. Links to software, data, and other resources.

This is a prototype of a semi-automatic data anonymization app for German documents.

contributions to the core pydicom base, including tutorials, extra plugins, etc.

Microservice for safe sharing and easy access to medical images

A collection of portable workflows, automation recipes and components for MLOps in a unified CK format. Note that this repository is outdated - please check the 2nd generation of the CK workflow automation meta-framework with portable MLOps and DevOps components here:

DICOM Adapter is a component of the Clara Deploy SDK which facilitates integration with DICOM compliant systems, enables ingestion of imaging data, helps triggering of jobs with configurable rules and offers pushing the output of jobs to PACS systems.

Lightweight DICOMweb Server with CouchDB

An object relational mapping for the LIDC dataset using sqlalchemy.

DICOM parser for golang

BIDScoin converts your source-level neuroimaging data to BIDS

Utility functions for working with DICOM and BIDS neuroimaging data

Extension to QuPath application adding support for reading from Google Cloud Healthcare API.

⬡ Shyft is a server-side framework for building powerful GraphQL APIs 🚀

Light DICOM package

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

A lightweight C++ DICOM library (for study purpose only!)

Anonymized dataset of COVID-19 cases with a focus on radiological imaging. This includes images (x-ray / ct) with extensive metadata, such as admission-, ICU-, laboratory-, and patient master-data.

A medical image converter

Bioinformatics curated workflows that use Biocontainers tools

centurylinkcloud.github.io/mdw/

singularity and Docker containers to easily get started with common dicom tools

Apache Liminals goal is to operationalise the machine learning process, allowing data scientists to quickly transition from a successful experiment to an automated pipeline of model training, validation, deployment and inference in production. Liminal provides a Domain Specific Language to build ML workflows on top of Apache Airflow.

Building extensible automation. Tideflow is a Realtime, open source workflows execution and monitorization web application.

🏥 OpenMRS Radiology Module

Cross-platform Dicom native codecs for fo-dicom

Tool for breaking into web applications.

DICOM DIMSE implementation for Node.js using the dcmjs library

📜 📒 Place for organization guidelines and workflows

Radiology Objects in COntext (ROCO): A Multimodal Image Dataset

DEPRECATED & Materials Moved: This sprint was to focus on brainstorming for the Joint Roadmap for Open Science Tools.

A Python framework for data processing on GCP.

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

A library and command line tool for anonymizing DICOM files

⤴️ Steep Workflow Management System – Run scientific workflows in the Cloud

An application displaying 2D/3D Dicom

Weasis plugin adding support for the Google Cloud Healthcare API

Github action to verify file changes that occur during the workflow execution.

Primrose modeling framework for simple production models