ClusterflowA pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
Stars: ✭ 85 (-96.11%)
FlowrRobust and efficient workflows using a simple language agnostic approach
Stars: ✭ 73 (-96.66%)
EuropaPuppet Container Registry
Stars: ✭ 114 (-94.78%)
The AppSample application and CD Pipeline for DevOps Dojo
Stars: ✭ 88 (-95.97%)
Stream Splicerstreaming pipeline with a mutable configuration
Stars: ✭ 52 (-97.62%)
SteppyLightweight, Python library for fast and reproducible experimentation 🔬
Stars: ✭ 119 (-94.56%)
SetlA simple Spark-powered ETL framework that just works 🍺
Stars: ✭ 79 (-96.39%)
SqueezemetaA complete pipeline for metagenomic analysis
Stars: ✭ 128 (-94.14%)
StetlStetl, Streaming ETL, is a lightweight geospatial processing and ETL framework written in Python.
Stars: ✭ 64 (-97.07%)
DotnettencyMutlitenancy for dotnet applications
Stars: ✭ 100 (-95.43%)
ForteForte is a flexible and powerful NLP builder FOR TExt. This is part of the CASL project: http://casl-project.ai/
Stars: ✭ 89 (-95.93%)
Unix StreamTurn Java 8 Streams into Unix like pipelines
Stars: ✭ 119 (-94.56%)
PipeDSP pipeline
Stars: ✭ 87 (-96.02%)
HookahA cross-platform tool for data pipelines.
Stars: ✭ 83 (-96.2%)
Pex ContextModern WebGL state wrapper for PEX: allocate GPU resources (textures, buffers), setup state pipelines and passes, and combine them into commands.
Stars: ✭ 117 (-94.65%)
TdpThe Darkest Pipeline - Multithreaded pipelines for modern C++
Stars: ✭ 67 (-96.94%)
SteeloverseerA file watcher and development tool.
Stars: ✭ 110 (-94.97%)
Drake ExamplesExample workflows for the drake R package
Stars: ✭ 57 (-97.39%)
SemsegpipelineA simpler way of reading and augmenting image segmentation data into TensorFlow
Stars: ✭ 126 (-94.24%)
SalmonteSalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
Stars: ✭ 49 (-97.76%)
VistrailsVisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Stars: ✭ 94 (-95.7%)
Ensembl HiveEnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
Stars: ✭ 44 (-97.99%)
Container PipelinesLet's get the ball rolling on some Container-driven CI & CD
Stars: ✭ 123 (-94.37%)
DrakeAn R-focused pipeline toolkit for reproducibility and high-performance computing
Stars: ✭ 1,301 (-40.48%)
Mara PipelinesA lightweight opinionated ETL framework, halfway between plain scripts and Apache Airflow
Stars: ✭ 1,841 (-15.78%)
Jira Steps PluginJenkins pipeline steps for integration with JIRA.
Stars: ✭ 88 (-95.97%)
DropseqpipeA SingleCell RNASeq pre-processing snakemake workflow
Stars: ✭ 119 (-94.56%)
Bio embeddingsGet protein embeddings from protein sequences
Stars: ✭ 86 (-96.07%)
Go spider[爬虫框架 (golang)] An awesome Go concurrent Crawler(spider) framework. The crawler is flexible and modular. It can be expanded to an Individualized crawler easily or you can use the default crawl components only.
Stars: ✭ 1,745 (-20.17%)
Chain.jlA Julia package for piping a value through a series of transformation expressions using a more convenient syntax than Julia's native piping functionality.
Stars: ✭ 118 (-94.6%)
NgseasyDockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
Stars: ✭ 80 (-96.34%)
Scrapy demoall kinds of scrapy demo
Stars: ✭ 128 (-94.14%)
MachineMachine is a workflow/pipeline library for processing data
Stars: ✭ 78 (-96.43%)
LastbackendSystem for containerized apps management. From build to scaling.
Stars: ✭ 1,536 (-29.73%)
MlboxMLBox is a powerful Automated Machine Learning python library.
Stars: ✭ 1,199 (-45.15%)
Bodywork CoreDeploy machine learning projects developed in Python, to Kubernetes. Accelerated MLOps 🚀
Stars: ✭ 145 (-93.37%)
AtacseqATAC-seq peak-calling, QC and differential analysis pipeline
Stars: ✭ 72 (-96.71%)
UgeneUGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (-94.88%)
Irapintegrated RNA-seq Analysis Pipeline
Stars: ✭ 65 (-97.03%)
PipelinexPipelineX: Python package to build ML pipelines for experimentation with Kedro, MLflow, and more
Stars: ✭ 127 (-94.19%)
Scrapy S3pipelineScrapy pipeline to store chunked items into Amazon S3 or Google Cloud Storage bucket.
Stars: ✭ 57 (-97.39%)
Gitlab Dashboard📺 TV dashboard for a global view on Gitlab Pipelines
Stars: ✭ 107 (-95.11%)
TormesMaking whole bacterial genome sequencing data analysis easy
Stars: ✭ 56 (-97.44%)
Gitlab Ci LocalTired of pushing to test your .gitlab-ci.yml?
Stars: ✭ 134 (-93.87%)
Dawn🌅 Dawn is a lightweight task management and build tool for front-end and nodejs.
Stars: ✭ 1,057 (-51.65%)
SupraSUPRA: Software Defined Ultrasound Processing for Real-Time Applications - An Open Source 2D and 3D Pipeline from Beamforming to B-Mode
Stars: ✭ 96 (-95.61%)
SnsAnalysis pipelines for sequencing data
Stars: ✭ 43 (-98.03%)
SarekDetect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Stars: ✭ 124 (-94.33%)
BlurrData transformations for the ML era
Stars: ✭ 96 (-95.61%)
Onhold🔊 Play sounds while and after shell jobs complete
Stars: ✭ 146 (-93.32%)
KartonDistributed malware processing framework based on Python, Redis and MinIO.
Stars: ✭ 134 (-93.87%)
NextflowA DSL for data-driven computational pipelines
Stars: ✭ 1,337 (-38.84%)